DreINT0179813 @ danRer10
Intron Retention
Gene
ENSDARG00000101562 | zgc:171570
Description
zgc:171570 [Source:ZFIN;Acc:ZDB-GENE-080220-9]
Coordinates
chr2:195958-203044:-
Coord C1 exon
chr2:202969-203044
Coord A exon
chr2:200530-202968
Coord C2 exon
chr2:195958-200529
Length
2439 bp
Sequences
Splice sites
5' ss Seq
GAGGTTGGA
5' ss Score
2.95
3' ss Seq
CAGGATGTGTTTTATTTCAGCCC
3' ss Score
5.87
Exon sequences
Seq C1 exon
ATGTGGAGCTGTGACGGTGTAAAGAAGATTATTAAAGAGGAGCAAGAAAACACAGGAGACACTGAGGAACACAGAG
Seq A exon
GTTGGAGATCTTTAATCCTTCATTAATGACAGATTTCCAGAATCAAATGCCCTGTTTACACTAATACATTTTAGTTTAAAGTAAAATGAACACATGATATAAGGAACTGCTATTTTCATTTGATATTAACAACTTAACAGACAGCAGAAATGTTGTGGCGTCGTGTAGCTGCATATTTATATGAGCGTCATCTTCACTGTGTGCATGTTTATAACAAAACAGAGCCGATAACATCACTGCCTCCTTTCATGTTCAGTGATAATATGAAACATTCCCTCTCTATTGCTGAATATCAGTTTAATAATCAATAATGGCCTTTTTAAAAGTGTAACGTACAATAACTTTATATATTATAGCAAATAAAGGCAGGCAGTCAGACAATGTGCGGAATCAGTGTCTGCGGTTACATTCATTAATATATTAACTGATCTTTGCGCTCAGCCAAAACACGTTACCTGAGAACAAGTCATAGATTCAGAAGACCAAAGTCGGGTCTTAATTAATTAAATATCACGCTTAACAAATATAATAAGATTAAATCCAGCGGGAGATTCTTGATGTCCGATGTGTAGCTCTCAGCGCTGCAGTGCATGCCGGCGTGTGTGTGTGTGTGTGTGGTCACGTGATGTGCGTTTTCCGTGGTGTAATGTTGACGGAGAGTTGTTCAGAAACACTAGGTGAAACACAAGTGTGGACGCGGATCACTTTCATTCTAAAAGGCCGTTTTAAAGGGCCATGAAACGCCCTCGTTTCAGCAGGGTGTTTTCACACCTCTACTTCGGGAAAAGTCAGAAAAGTGGGCGTGTCCAGCTCTGTTTAGGGGGGAGTGTCGGAGGAACTAAAGTGAGAGGGTGTGGGAGTGTCTATTTGGGCGAGCGCGAGTTTCAGAGTCAAAACACACACACACACACACACACACACACACACACACACACACACACACGGGAGAAAGTGATGGTGTTTAACCTACATGGACATCTGTAGTCGAATTATTTGCCAAATGATTAAATGTTGGACTTTAACAGCAGTTTGGCTCTTTCATTCAGGGAATTCATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGACGCGGATCACTTTCATTCTAAAAGGCCGTTTTAAAGGGCCATGAAACGCCCTCGTTTCAGCAGGGTGTTTTCACACCTCTACTTCGGGAAAAGTGGGCGTGTCCAGCTCTGTTTAGGGGGGAGTGTCGGAGGAACTAAAGTGAGAGGGTGTGGGAGTGTCTATTTGGGCAAGCGCGAGTTTCAGAGTCAAAACACACACACACACACACACACACACACACACGGGAGAAAGTGATGGTGTTTACATGGACATCTGTAGTCGAATTATTTGCCAAATGATTAAATGTTGGACTTTAACAGCAGTTTGGCTCTTTCATTCAGGGAATTCATTCATGCCCCTCGCCACAAACGAGATATTTGATTCGAGGAGCTGCTCTAAGCGTGTATTTTTCATGCAATGTTTAATGCCACACGGCGAATGAGAGAAAAAAAACCCACCACATTTCCCGGAAACTTATATGCACACGGCAGGTAGTGTCAGAAAGCCGCGTGTGTTATTCCGGTCACTAAATGCGGCGAAAATCCTACACAAGGTTAAAGTTTGGTTGTGGTGCTAACATGTTTACACTCGGTGCAATAGTTAACTTAGTTCAATACGAACAAACTGACTTAACAAAGAGCACTGGTCGCTCACTTACCAAACAATGTTCCTCCTTAGACACGTAAGTTATTGTTGTCGAGCGTCGCGTACACTGTTAATCCACACGTGACTCCAGCTGCGCTCTCACAGAGAGAAAATGAAAACAAAACTTCACTGCAGCAAACTATAAAAGCAACACTTCACGCTTGTTTTGCCAACACAACGTGGCGTCTCTGTCGTCTAAACACTGACAGTAATGAATATTAATGAAGTTGCACAATAGAGCGCGCTGATTCGTTTGAACCAAGCCTTACTCATGCATTAATGCAGCACACTGTAAGACGTAATAAGACACACTCTGGCACAGACGTCCAGTCTGCACGCTGGAATACACGCTATTATCTCATGACCGTGACGCAGCTTCAAAAATTCGTTTCAAACCGGAAGTACGAATTTGCTTGAAATAACGCAAAATCAACCAATTTACACTTTTTAGTGAAATATAGGTGTCCTAATAGTGTTTTTAGCAGTGTGGGACACATATACCACTGTCAACAGCTCAAACACATGTGTTCTGGTGTTTCGTGACCCTTTAAAACTAAAACGTATTAATGTAAAAGCAGGGCCACAGACTGTTGAAAATGCAGATAATAGAGGTGTCACTTGAAATTAAAGTCAGGATGTGTTTTATTTCAG
Seq C2 exon
CCCTGATGATAGTCAAGGAAGAAGAGAGAGAAATTAAAGAGGAGGAGGAGGAGGGATGTCAAGATGGTGCGGTTGGAGAAACGCAATCTCAACCTGCAGACACTGAAACCGTTTTCACCTGTCCTCAATGTGGAAAGAGCTTCAGAAAGAAGCATTACCTCAAGCAGCACATTGGCATCCACATTGGATTGAAGCCGTTCGCCTGCGCTGAATGTGGGAAGAGCTTCCGAATTAAATCAAGTCTGGAGGTGCACATGAGACTCCACACCGGAGAGAAACCGTTCACGTGCTCCCTATGCGGGAAGAGTTTCAGACGCTCGGGAACGTTTGACGATCACCAGCGAATTCACTTCGAAGAGAAGCCGTTTACATGCGACGAGTGTGGAAAGAGCTTCAAATGGGCGAACTGTCTCCAGATCCACAAGCTCATTCACTCTGGAGAAAAGCCCTTCGGCTGTGATCAGTGCGGGAAGAGATATATTCAGAAGTCAGAACTGCGGGACCACATGATGTCCCACACTAACGAGAAACCTTACTCGTGTGAGTTTTGCGGGAAGGGGTTTGCGCGCTTGTGTCGTTTTCGACACCATCAGAAAACACACACGGGTGTGAACGAGTATTCATGCACGGATTGTGGCCAAACCTTCACGACGTTCACCCTGCTGAAAGCGCACCAGAAGATCCACACCGAAAAAAGACCCTATAAGTGTGCGTTCTGCCAGAAGACCTTCAAGCAGTCGGGAGCGTTTAAGAAGCACCATCGAATCCACTCCGAGGAGAAGCCGTTCGCCTGTGACGAGTGTGGAAAGAGCTTCAAGTGGGAGAACAGCCTCCAGATCCACAAGCTCATTCACTCTGGAGAAAAGCAGTTCAGCTGTGATCAATGCGGGAAGAAGTTTGTGCAGAAGTCAGACCTGAAGACCCACATGATGTCCCACACTGGAGAAAAGCCGTACTCGTGTGCGGTGTGCGGGAAGGGCTTTGTGAGGTTGAGCGTTTTTAAAAACCATCAGAAAGCACACGCCGGGGTGAAGGAGTTCGTGTGCTCGGATTGTGGAAAAGCCTTCACCACGTCCACACTGTTAAACGCGCACCAGAAGATCCACACTGGAGAAAAGCCCTACAAGTGTTCATACTGCGAGAAGAGCTTCACCAGTTCTGGAAGCCTTCAGGGACACGAGAGGATCCACACCGGAGAGAAGCCCTACACCTGTGACGAGTGCGGGAAGAGTTTCAAATGGCGGAGGAGTCTCCAGATCCACAAGCTCATTCACTCCGGGGAAAAGCCCTTTGACTGCGATCAGTGCGGTAAAACGTTTGTGCAGAAGTCAGACCTGAGGACACACCTGATGTCTCACAGTGGGGAAAAGCCGTACTCGTGTACGGTGTGTGGGAAGGGCTTTGTAAGGTTGTGCTTTTTAAAAATGCATCTAGAAAAGAATGCACACTGACAATGACCTAGCGACAAGTCTCTATTAATAATTGCTCAGATGATACCCAGCAAGCATCATTGTGTTTAACCCCTTAAACGCCTCCTGGAGGCTTATGTTTACATCTTATTTTTGCAATTAAATCTTAATCTAAACATGACGAACTGTATATCGATGGGAAGGTCAAAGATGTGTGAGTAGATATGCATCACTGCTTATAGTTATGTGTGAAGAGTAATAGATGAAACACGTTTTCTGTCACCTTACAACCTGTGGGGGCGCTTACACTTACATTTAAACCATAATATTGTAGTATAAACGTGAAGCAATCATAACAAGCTATATATCATTTGAATGCGCAACATTTCTAGTTTTCATATCTGGTGGCTGATTTTTGATAGATATTACTGAGTTAGTAATAACAGTGATTTATTAATTTGCACTCATTAGAGTAGTAAAGTATTACTTTGCTACAGCAATCCACATGTGAAAGTGTTTTCGGAGGCTAAATTCAACTCTAATACCACCAAACTGCCCATACTACATCAGAATTGTATGTTTACTTTACAAATATTGTCAAAAGTATGAAAACATATGGTTCATATTCCTCAAAAACATAAGTGGTGCCCGTCTTTTCTCACTAATGAAAACCGTATGGTGACCTAGTGGTCATGTTTGGTACTGCGGCCAAACTACATCTCACTGAAAGCTCAATATTTTGGAGATTTGGAATAGACACTGATCACGTACTTAGCTTTGATTTTCTGTCAACTGTAGGCTAAACCTTTTTTATGTATAAAAAGGTATTTTATGTAATATATTAAAATATAAATGTACTGTTTTTATAAATTAATTCTAAGTAATGTAACTTGTTTTATTTAACATTTTCTCACTTCAACTACAATCTGACACCTGTCTTCTTCAAAATGACGGTAATCTTAAATCTACGCTCAATTGATGCTCAAAGGTATGTTAATAAACTGGAGGCGACAGTTAAGGGGTTAGAAGAAGAAGTCTGATAGACGTCAAATCGATGTTTAAACATTAGACGGCTTGACTAAGACATGGATACAATTATTATGTAGGAAGAGTGATAGATTAAACACGTTTACTGTCACCATACAACCTGTGTGAGCGTTTACACCTACATTTCTAAACCATAATATTGCAGTATAAACGTGAAGCAATCATGACAATCTATATATCGTTTGAACTCTTAATATTTCTAGTTTCCATTTCTGGTGGCTGATTTTTGATAGATATTACTAAGCAGCAGTTGTTTATTAATTTGCAACAGCACTCATTAGAGTAGTAAAGTATTACTTTGCTACAGCAATCCACATGTAAAGGTGTTTTTGGAGGCTAAATTCAACTCTAATGCTATCAAACTGCCTATACTACATCAGAATTCTATGTTTACTTTACAAATATTGTCAAAAGTAGAAAATAATATGGTTTATATTCTGCAAAACATCAGGGGAACCTTTGTATGGTAAGCAATGTAAACACGGTGATTATGTCTGGTAGTGTGGCCAAACAATCTTACAGAAAAAAAACTCAATTTTTGAGATGTTAACTTTACATTTGGAATATAATTTGATCAAATGTTTAGCTTTAAAGTTCTGTCAATTTTAGGCTAAAATATGTCATGTAATGTACTAATATACACATGTATTGTAGGCACATAACTAATGGTTTAACTCTTTAACCTTTTTTCCACTTCGGCTACAATCTGACATCTGTCTTCTTTAAAATGACACCAATCTTAAATCTATGCTCAATTAATGCTCAAATATTGATGTTTAAAATGTGGGATGACAATAAGGGGTTTAAAAAGCTGACTAGATGTCTAATAGATGTCTCAACATAAGACGGCTTTACTAAAACAAGGCTAAATTTGGGTTAGTGGTATCTGTCTAGTCTGGGTGTTTGATGAGTAGTTTAGTTTTGGACTATTCATAGACGTCAATTAGTCGTTCACTGATGGATCAAATTTAACTTTATGCAAGACGTCCATGTTTAGATGTCTATTAGACGTGTGTTAAGCATTGCTTTGTGGGTGTTTATCTAACTATGAATATCTGTGGGATTGATAAGTGTAAATGTTCTGCTTGAGATGAATGAGGTTAGTATAAATCAGGAGCATAATAAGCTTCTGCGTCTGCTCAAACATCGACTTTAAGAGACGGAGATTTCATTAAAACAATCGTTCCACTATCTACAGTGAAACAGAGACATTATGCCTAAATATTCATCACATCAGGATGCCTTTATGCAGAATGAACTGATCTGATTTTCCCCTTATGCCTTTTCCTAAACGCATGTGTAGACCTGCAGGCTGTGTTACAAGGTTTTTTTTAGTTTATGTTCTTTTTACTGTTTAGGATGTCAACCGTACCCTATAAAATGTCTGGAAAACAAACAAACAGTGTAGCGTTGAGATTTTAGAAAATCAGTAAATCTGGGTAACCCGTGCTCAAACAGGAGAGGAAATCACAGAGCTAAAGATATGTACAGAGCAACAAGCAGAATAGCCAGTGTGGAGTATATATAACTTTATTATTATTATTATTATTATTATTTTAGTGAAAACACACACACATTTAACAAAAAAACTACAAACAAGAAAAACACAAGCCCATCCTCTTCCAGCAGTCCGCTCATCTGAGATCTACAACACAAACACTGGACATTGAGGATATTTATAACACGTTTCAAATATAGATGTGTTGAATTTAAAAAAGACGATGTCAAAACCTCCACAGTAATGTCAGATTCCTCATCTGATGTGGAGAGAGCAGCTTGTCTGAACGCAGCCTTTAGGAGGCTGATCTCAGGTCTGGTCTTGGTTTGCTCAGAGTCTGTTGTTCCTCTGCAGATGAAGCTGTGCTTCTGCTCTTTCAGTCTCTTTCTGCAAGTGTTGAAAGTGATTTCAGAAATCAGCGATCGCCATTCTTTGCATTTTTTGGTTATTCTGTAATCATTGCATGCATCACTAATAAATATTCTAAACACAAAAATATTTCCATTGTGATGAATATATATATATCAATTAGTGACGGAATAAAATTGTTGTTTTTGTCTTTTTTTGACATGTTTGGGGGATTATTTTATGAGGCCAAACTCTTTCTGCTTTGCTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101562:ENSDART00000101067:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.538 A=NA C2=0.064
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF100834=DUF2321=WD(100=15.1),PF127602=Zn_Tnp_IS1595=WD(100=8.9),PF0009621=zf-C2H2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.2),PF0217613=zf-TRAF=WD(100=11.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF0217613=zf-TRAF=WD(100=10.7),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF100134=DUF2256=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=5.4),PF0217613=zf-TRAF=WD(100=11.4),PF134651=zf-H2C2_2=WD(100=5.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]