RnoINT0168760 @ rn6
Intron Retention
Gene
ENSRNOG00000043223 | Zfp949
Description
zinc finger protein 949 [Source:RGD Symbol;Acc:2302581]
Coordinates
chr8:96377137-96380770:+
Coord C1 exon
chr8:96377137-96377229
Coord A exon
chr8:96377230-96378777
Coord C2 exon
chr8:96378778-96380770
Length
1548 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
3' ss Seq
TTGTTTGTTTGTCTTTTTAGTCT
3' ss Score
9.52
Exon sequences
Seq C1 exon
GGCAATGTATCCCTAAACCTGAGTTGATCTTCAAGTTGGAACAGGGAGAGGAACCATGGGCAGCAGAAGAACCTGCAAACAAGACTCTGCCAG
Seq A exon
GTTAGTTGTTAGTATGTGTGGATGGGGAGACTGTGTATAACAAAGGTTGGCCAAATTATCAATTTATCCCCAAGTTCCATATCTGAGGGCTCAAACATGTTTGTTACATAGTCTGTAAGGAGAATTCTCTCGCATGTGTTCCTACATTTCAATTTGATGAAATGTTTCTTAGGCCTCCACATCCCCCATCTAACCTCTGACTTCTGTAATTTGATGTTTTTCTCTGGTACTTTTTTTTCATAGTTTCAATTGCCTCTTACACTCCATATTTCATGTGCTTGTTTTAGCTTTAGCACATGCTAACGAGGTAGATTTCAAGTGTTGGTTCTTGTATATTTATATAAATAAAAATGTAAAAGTAATGTCCTTACTTCTGAAATTTCAATAAAAGACAAATAAGTTTATTTATGCTAAGGAGTCACAAACAAGTATATGTAATGTTGAGTCAGAGTATAATGAGTAACATGGTGTTTAAAGTTACAGAGTGTTTCCCTTATGAAGTTGATGAGAAAGTACAGAAACAGATTCAGAAATTAGGCTGTGAGCCATGATCTAAGGAATTAGCAGGACCCTTAGGAAGGGGTGTTCCTACTTGAGAAAGAATCAAGAGCTTTTTCATGTTTTTGTCCCAAGGAGAAGTGAAACAAGTTTTCAAGTTGAAGAACTCAAGCTTTTCTGGATGGGAACTGTAATTTTAATGTAGCACTTCTTTAATTTTCCTTCTCTCATTCTAAAGCAACAAAGATAATGAGGAATTGTAGAAGCCACTTTTATGAAACTAAGAGAAGTCAAGTCTCTGAAACATGATGACATCCTTGAGAATTGATGAATTACTAGACGGTGGTGCATGGATCACCACTTTGGAGGCAAATGTTAGGGCTCATGGTTATCACAAGTAGCCAGATATTTTAGAGATGTACAGCATATATATTTTTCCAGAATGGTAGACAGGAGTTGAGATCTCAATTACTGGAATCTGTTTTTGGTGGAAGTAGAAAGGAAGAAATTTGATGTTTGAAATACTCAGAGTCTGTCATCATTCTTTGTAATAACTCTAAGCAAATGAGATGCAAACTCGTGGCCATACTGGAAGCTTCAGGTTAGGAAGCATCCTATTGGAGTTTGCTCATAATCTGCAAAGAGGATGTCCTAGAAATTAGACCAGAATAAAGAGAATGGCAGAAAGAAAAGATCACGGTCATATATTAAAGTATACATGAGACTAGAACCTGGTTAAAAAAATACAACCATTCTCTGAGTGGAAAACTATATCTAGCAATTGGTAGATAGTTTAACAAAATATTTCTTCCCCAAAATAAAATGAAGCAATACTTCACTACTACTTTAATACTAGGAAACTTATCCGTGTATTTCAGTATGCTAAATCAAAGGAGTAAACCAAAATTTATAAGCTAATACAGTACTTACTATGATTTTAATAACAGTATGTGCTAGTTGGCTAGAATTTTTTTACATAAATATGAGAATCCCATTAGAAACTCTTAAAAATAATTCATAGAAATTACTTTTGTTTGTTTGTCTTTTTAG
Seq C2 exon
TCTTCTGCAATGTGGATGGTATAATTGAAACCAACCAGAAGAGTCATGAGAGACATTTGTGGCAAGTTACTGCCAACAGCCACAATAGAGCAACTGAGGAAGCAAATGGGTTAGAAAACACTTTTTATTTATACTCCATGAATATTTCAAATTTTGTTGTAAACAATGGAAACTGTTCAAGAGTGAAGCCTGAGAAGTTGCATGGATACCTGAATACATGTCTCCCTTCTGAACCTCATGGACTGTGTACTGTAGAGCAATATAACGACTGTTGCATAGCAGGGAAATCCATCAGATGTCCTGAGCAGTTGGGGCAGCATTCCAAGGTTCAAACTGGACAGCAGGATTTTGAATATATGGGAGAAGGGAAAGATACAAAGGAGGCAAAACTCTTGAAAAGCATTGCTCCATCTAAGAGACTTCACCTGGGACTGACTTCCTGTGAGCATGGTGAATGTGAGCAAGTTTCTGTCGAGTCAGATGTCATGGATAATGGAGGGAAGACAACTTTCAGTAGGACATGTAACCTCACTAAACACCAAGCAACATACTTAGGGAGAAAATCTTGTAAATGCCTTGAAAATAAGAAAACCTTTACCAGCAAATTAGACCTTACTGTTCATCTGAGGACACATAACCAGAAAAAAGACCATATATGTATCCAGTGTGAGAAACCCTTTAGCACTAAATCTTCCCTTACTGTTCATCAGAGAATTCACACAGGAGAAAAGCCCTATGGGTGTAGTGTATGTAATAAAGCCTTCAGACAAAAGTCAGCTCTCATTGTACACGAGAGAACTCACACTGGGGAGAAACCCTTTGGTTGTTATGAGTGTGGTAAAGCCTTCCAACATAAGTGGTACCTCAAAATGCACCAGAGAACTCATACTGGGGAGAAACCATATGAGTGTAAAGAATGTGGGAAAGCCTTTCTAAAGAAGTCATACCTCAAAATGCATCAGGGAACTCACAAGAGTGACAAACCATATGAATGTGAAAACTGTGGAAAAACCTTCCATAACAGGTCATACTTCAATATGCATCATAGAACTCACACTGGCGAAAAGTCCTATGCATGTAATGAGTGTGGAAAGGCCTTTTACCAAAAGTCAGACCTCAGGAGGCATCAGAGGATCCACAACAGTGAAAAATTACATGAATGTAAAGAATGTGGAAAAGCCTTTCAAAATAAGTCATATCTCAAAACTCACCAGAAAGTTCACACAGGTGAGAAACCATATGAGTGTAAAGAGTGTGGAAAGGCATTTCAAAACAAGTCATATCTCAACAAGCATCAGATAATTCACACAGGTGAAAAGCCCTATGAATGTAATAAATGTGGAAAAATGTTTCAGTGGAAGTTAGTCCTCAGTAAGCATCACAGAATCCACACAGGGGAAAAGCCCTATGAATGCATTCAGTGTGGAAAAATGTTTGGCTACAAGTCATCCCTCATTGTTCATGAGTTGATTCATTCTGGGGAGAAACCTTATGAATGTAATGTATGTAGAAAAGCCTTCACACAGAAATCAAACCTAAGTAGGCATCAGAGAACTCACCGACATGGGGAGCTATGATAGGAGTGGGTATGGATGTGGTCCCATGTTCTGCCTCTCCTCTGGAGATGCCCAACAGCCAATATACTGGCTTGGGGGAGACAAGGCGAAGACAGGGACAGGGGTCTGAAGTCTATGTTCCTCTTGGGATGTCAGACACTGCTTCATGCCAGGCTGGAAGAGTGAAACAAAGTCTAGGAGGGGAAGGAGCCTGGTCCAGTTTGGAGTGAGTGCTGAGTCCCAGAGGGGCGGGAGAAGAGAGAGGTCTTATGGAGTTTTAGTATTATGGCTCCTTTAGGTGAAAGCCTTCCCTGAGGCGATCTTTAATGAAGAAGCTCTCTTCTTGATTGATCTTAGCTTGTTTGTATTACTTTATTGGGGGTGGATGTGAACACATAGGCTTTATTCTGGGTGAACAAAGGATTATGTATTTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043223:ENSRNOT00000032976:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=NA C2=0.078
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGAACAGGGAGAGGAACCA
R:
CCCTGCTATGCAACAGTCGTT
Band lengths:
342-1890
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]