HsaINT0188234 @ hg19
Intron Retention
Gene
ENSG00000227124 | ZNF717
Description
zinc finger protein 717 [Source:HGNC Symbol;Acc:29448]
Coordinates
chr3:75786029-75790519:-
Coord C1 exon
chr3:75790427-75790519
Coord A exon
chr3:75788497-75790426
Coord C2 exon
chr3:75786029-75788496
Length
1930 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TACCTTTTTTCTCATTTCAGCTG
3' ss Score
9.85
Exon sequences
Seq C1 exon
GGCATTACATTACCAAACCTGAGATGATCTTCAAGCTAGAGCAAGGAGCAGAGCCATGGATAGTAGAAGAAACCCCAAACCTGAGACTTTCAG
Seq A exon
GTCAGTCAGTGAATACCAGGCAGGGAGGCCTGGAGGAGTAATGCCCAGCAAATTTTTGTAGTGTTATCTTGTTTTCACCACTTTTTTCCCTAGGTCTTCGACCTGAAGGCTGTTGGTCTGCATTAAATGTGCATTATATAGTCCCCAGGGGTAACTCTCATGCATATATCCCAGTCTCTTATTTTTCTGAGTATCTTCTTCTATTTACCCCAAATCCAATCCCTGCCATCCTCTCCTTAGGCCTTTTTCTCTGCTATTTATTTTCTCTGTTTCCCCCTTTTCCTCTATTCTGATGTAGTATCTTAAAAATTTTTTTAGACATTCATGCATTTATTTATCCTTTGAATGTATCTTAAGTGATTTTTAAGAATCAGTCATTATAACGATGATGAAAATGGTGTTTCTTTTTAAGCTATAGCTTTATTCTTGTTTTATTTTTTATTAAACAGATGATTCTCACTCTATTTCTCAGACTGAAGTGCAGTGGCATGATTATAGTTCACTGTAATGATGAACTCCTGGGCTCAAGTGTTCCTCACACCCTAGCCTCCCAAGTAGCTAGGACTACAGGTGTGTGCCACCACACCTGGCTAATTTTTTATTGTTTGTGGAGATGAGGTCTTGTTCTATTGCCCAGGCTGGTCTCGAACTTCTGGCCTTAAATGATCCTCGTAGACAACCACCTACAAAAAAAAAAAAAAAAAATAGCTGAGTACGGTGACAAGGGTTTGTAATCCCAGTTTTTATACTTGGGAGGCTGAGATGGAAGGATTGCTTGAGCTCAGGAGTTTCAAGCTTCAGTGAGCTATGATAGCAACACTGCACTCCAGCCTCAGTAACAGAGTAAGATCCTGTCTCGGAAGGAAATTATGAAGCTGAGGAGGACCCATCATAGGGGCCTGGATAGGGGTGGTGCTGGACTTGGGAGGAGAACCAGAAGATTCTGGGTCTCAAGTCCAAAGAAACTAATTATTTCCTGTTGAAGGGCTCAGATTTCTGTTTGAGAGTGGAGTTTGTAGTTACCATTGGAAGATGAGAAATGTACAGGAAACTTCATTTTTATATAAAACTGTGTGACATCTGAAACTCCAAAACACAAAATAAAACCCTTCAAAAATGGTGAATTATCAAGCAGCGATTGGTGAGTGGAGAGGGGCACGGCTGTGGATCTCAGAAGGAACCAGAAATACACTTTTCGAAGATGACGGGCACAGCCTGAGTTGCAGAACCAATCCTTCAGATCACCAGTGTGGTTTTTTGACTGGAGCTTCTGTGCCTATTATGGTTCTGGGAAGCAGGGGATGTCATGTTTAAGTAGGAATTTGCCAGGATCTGTTTTTGTTTAACATGGGGAATAAGAGATTTTCTGCTTGGAAAACCTCCAGACACATTTAACCATTCTCAGGGAGGAGTGAAAGGTTAACATATAGGCAAAATCCTGTCCACAAGCTGCTTCCATGCTTAGGAGACAGAAAAATGGCCATCTCCTATACCTACCAGTTGCTGACCCAGGAAAAACTGGCTATCTTCAAAGAAGAATAAAGAAAAAATAGCAGCTATTAAAACAGCCACTATTGTTATATGAATAAATAAAAAAAAAGAGAGAAAACATATGACAATAATGAGCACTTATTAAAACCTATGAGTAGGAAGTAGATGCATATTATTACCAAATAATTCTTTGTGAAATAAAAAAGAACAGGAAAACTTCAAAATGCAAAGAAAAACTCAATTGAACATTAGAAAATATACTGATTTATTACATTATGTCAGTAGGAACAGAAACCATATGCATATAAAACCAATACCCATATTTATTTTTGTCAAATCTTACTCCACTGAGATAGGAAGTAATTTTTTTTACCTTTACACAAGCATTCTGTAAGACATGCTCATGTGTGGTTCATGGATACCTTTTTTCTCATTTCAG
Seq C2 exon
CTGTCCAGATCATTGATGACCTTATTGAAAGGAGCCATGAAAGTCATGATAGATTTTTCTGGCAAATTGTAATCACCAACAGCAACACATCAACTCAGGAGAGAGTTGAATTAGGAAAAACATTTAATTTGAACTCAAACCATGTTTTAAATCTGATTATAAATAATGGAAACAGTTCAGGAATGAAGCCTGGGCAGTTTAATGATTGCCAGAACATGCTTTTCCCTATTAAGCCTGGGGAGACACAGTCTGGAGAGAAACCTCATGTCTGTGATATAACCAGGAGATCCCACAGACATCATGAACATCTTACTCAGCATCACAAGATTCAAACTCTGCTGCAGACTTTTCAATGTAATGAACAAGGGAAAACCTTCAACACGGAGGCAATGTTCTTTATACATAAGAGGGTTCATATAGTACAGACCTTTGGTAAATATAATGAATATGAGAAAGCCTGTAATAACTCAGCTGTTATTGTCCAAGTGATAACTCAGGTAGGACAGCCAACTTGCTGTAGAAAGTCTGACTTCACTAAACATCAGCAGACACACACAGGAGAGAAACCCTATGAATGTGTTGAATGTGAGAAACCCTCCATTAGCAAATCAGACCTTATGCTACAGTGCAAGATGCCTACTGAGGAAAAACCTTATGCCTGTAACTGGTGTGAAAAATTGTTCAGCTATAAGTCCAGCCTCATTATCCATCAGAGAATTCACACAGGGGAAAAGCCCTATGGATGCAATGAATGTGGTAAAACCTTTCGCCGTAAGTCATTCCTCACTTTACATGAGAGAACTCACACAGGGGATAAACCCTACAAATGTATTGAATGTGGAAAAACTTTTCACTGTAAGTCACTTCTCACTTTACATCACAGAACTCACTCAGGGGAAAAGCCCTATCAGTGTAGTGAATGTGGAAAAACCTTTAGCCAGAAGTCATACCTCACAATACATCATAGAACTCACACAGGGGAAAAGCCCTATGCATGTGACCATTGTGAAGAAGCATTTAGCCATAAGTCAAGGCTTACTGTCCATCAGAGAACACACACAGGGGAAAAACCGTATGAATGTAATGAGTGTGGAAAACCCTTTATCAATAAGTCAAACCTCAGGTTACATCAGAGAACTCACACAGGGGAAAAACCCTATGAATGCAATGAATGTGGGAAAACGTTTCACCGTAAGTCATTCCTCACTATCCATCAATGGACTCACACAGGGGAAAAACCCTACGAATGCAATGAATGTGGGAAAACCTTTCGCTGTAAGTCATTCCTCACTGTCCATCAGAGAACTCATGCTGGGGAAAAACCATACGCATGTAACGAATGTGGAAAAACATATAGCCACAAGTCATACCTTACAGTACATCACAGAACTCACACAGGGGAAAAACCCTATGAATGTAATGAATGTGGAAAATCCTTTCACTGTAAGTCATTCCTAACTATACATCAGAGAACTCATGCTGGCAAAAAACCCTATGAATGTAATGAATGTGAGAAAACCTTTATCAATAAGTTAAACCTTGGGATACACAAGAGAACTCACACAGGGGAAAGACCCTATGAATGTAATGAATGTGGAAAAACCTTTCGTCAGAAGTCAAATCTCAGCACCCATCAGGGAACTCACACAGGAGAGAAACCTTACGTATGTAATGAATGTGGAAAAACCTTTCATCGCAAGTCATTCCTCACCATACACCAGAGAACTCACACGGGGAAAAACCGTATGGATGTAATGAATGTGGAAAAACTTTTTGTCAGAAATCATACCTTATTATACATCAGAGAACTCACACCGGGGAAAAGCCCTATGAATGTAATGAATGTGGAAAATCCTTTCATCAGAAGGCAAATCTTCAGAAGCATCAAGGTATTCACACGGGGGAGAAACCCTATGAATGTAGCAAATGTGGAAAAACCTTGTCAGAAGTCAGTCCTCACTGTACATCATAGAACCCATACCGGAGAAAAACCTTATGAATGTAATGAGTGTGGGAAAACCTTTTGTCACAAGTCAAACCTCAGTACGCATCAGGGGACTCACTCAGGAGAGAAACCCTATGAATGTGATGAATGTAGGAAAACTTTTTACGATAAGACAGTTCTCACCATACATCAGAGAACTCACACAGGTGAGAAGCCATTTGAATGTAAAGAATGTAGGAAAACCTTCTCCCAGAAGTCAAAACTCTTTGTACATCACAGAACTCACACAGGGGAAAAACCCTTTAGATGTAATGAATGTAGGAAAACTTTCTCCCAGAAGTCAGGCCTCAGTATACATCAGAGAACACACACAGGAGAAAAACCTTATGAATGTAAGGAATGTGGGAAAACCTTTTGCCAGAAGTCACACCTCAGCAGGCATCAACAAACCCATATAGGAGAGAAATCTGACGTAGCTGAGGCAGGCTATGTGTTCCCTCAAAATCACTCTTTTTTCCCTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000227124-ZNF717:NM_001128223:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.110
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=3.2),PF0013017=C1_1=WD(100=6.7),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF0013017=C1_1=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.0),PF0013017=C1_1=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=2.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGCAGAGCCATGGATAGT
R:
TGTCTGTGGGATCTCCTGGTT
Band lengths:
348-2278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)