MmuINT0179160 @ mm9

Intron Retention

Gene

ENSMUSG00000037001 | Zfp39

Description

zinc finger protein 39 [Source:MGI Symbol;Acc:MGI:99183]

Coordinates

chr11:58701655-58706556:-

Coord C1 exon

chr11:58706464-58706556

Coord A exon

chr11:58705049-58706463

Coord C2 exon

chr11:58701655-58705048

Length

1415 bp

Sequences

Splice sites

5' ss Seq

CAGGTGAGT

5' ss Score

10.67

3' ss Seq

GACTTCTTTTTTTCTTTTAGATG

3' ss Score

11.03

Exon sequences

Seq C1 exon

GCCACTGCATTACCAAACCTGAGGTGATCTTTAAGCTGGAGCAAGGAGCTGAGCCATGGAGAGCAGAAGACGTCCCAAAGCAGAGCCGAGCAG

Seq A exon

GTGAGTGAGTGCCCCTCGGACAGACAGGCGAGGGTGAGTAGACTCTCACAGACACTGGCCGTGCCGAGCTGTTCACACTCAGGCGCTGTTCCTAGTCTTGGGCACAGCTGCTGCGCTTCCTCACATAATTCCTGTGTGCGCTCTCCAAGGAGAATGTTCACGTGAACTTTTGTTCTCCTTTTTACTTTGCTGCATATATTTTCTTTAAGTGCGTGGAGCGTTATAGACAGCTTTGGTTCGTTGGTTAGCTGCTGTCTCTACATTCTCAGCTGTCTGTGTTTTCTACCCGAAGCATTTTTGGCTGTGTTCTTTTATCACATGGTATTTTGTTATCTCCTAAGCATTGCACTTCTAAAATTAGACATGCAAATAATAATAAATATATCTGCACATAAAGAGCTTACATTTTGTTGAAAAAATTAAACACATATAATATATGGTTGTAAGATAAGAGTCACAAAGGATGATTTATCATAACAAGAAATAGACTGTTTTATTCCAGGAAAAGTCTAAAGGAAAGGGAATTTTAAGGAGACTATTATTCATCTAGTTTAATCTTGACACTTCTTTTTTTCCAATATTTGGTATATCTAATACTTGGGTGGGTATAAAATATAGATTTGTGTCTTAGTCCTTACAAAGAAGGAAATTGGCAGCTTAATATAGATATTTATATCATAGTTTTTCAGACATTAACTAAGGGGTTGGTAAGGGAATCAGACAAAAAGGCCCAGCATCAGGTTTCCTGTCCCACGGGGTAGAATGCCTGTGAGTGAGGGAGAGTTCTCAGCACGGGAAGGAAGGCGAAAGCGAAGCTCAACAGGAAGAGTAGGGTCCGCTGTCACGGAGCGGAAGGGAAGCAGGGCTTTCGTGTTGACAGGCTGCAGTTTCTCTGTCGGTGTGGAAGCTGTCATCTGCAGTTGTCTGTAATGTAGAAGACAATAGACTTACACAGAAGACCTCATTTATAGTGTAGAAGACAGCTTAATACAAAACAGAAGCTTCCAGAAGCAGAGAATTATAAAGTATAAATTATTTATAAATTATAAAGTACAAACCTCCATCCTCAGATAGCTCGCTGATGAGCATCTTCCTGTTACAGATCAGAAAGAAGGAAGGTGGGACGCACTGTAAGAATGAGAGTGAAGGGTGGGAGGTAGGGGGAATGGCAGATGGAAACGTGTGTTTCAAATGAACTAAACACCTTAAACCAGTGAAGTGATGTGATTTTACATTGTAAACTCTACGTTACAGATCCACTGGAGACACACACACACACACACCACACACACACACACACACACACACACATATATATTTATATTATTGCTAAATCATAATGGGATGAGAACGAGAAGTCAGTTCTTCATTTTTATGCTGTAACATGAGCTTGGCGACTTCTTTTTTTCTTTTAG

Seq C2 exon

ATGTACAGAAGATAACGGAACTGAACGAAACCAGCCAGGACAATGAAGAGAGACATCTGTGGCACCATGCAATTACCTACAGCAACAAGTCAACCGAGGAGAAAGTTAAATTAGGAAACATAGTTAATGTGAGCTCAAACTGTGTTTCAAATCTGACTGTAAAGAATGGAAACTCCTCAGGAATGAGGCCTGTGGCACTTACTGTGTGGCAGAGTGTCCTTCCCCCTAACAAGCCCGATGACACGAGGATTGGAGAGGAACTTGATGCCTCTCTAACTAGTGAGCCCCCCATACACGCAGAGCATCCTGGGTTGTATAGCAGAGCTCCAGGCACTGGACAGCAGTTTCAGTGTTGTATGCAAGAAGTGACCTGCAACACAAAGGCATTATGGACTAAGAGGTTTCACATTGCACATGGGTCCAGTAAGTTTGGCGAGTCCGAGAAAGTGCCTGATGAGGTAGCTCTTCATGCCCAAGACGTGAGCTGGGTACGGGCAGAAACTTTTGAATGTAGTATTTGTAAGAAAACATTCTGTACAAAATGTGAGCTCATGAAACACAAGAAAATACACAAAGGACAGCAATATTACACGTGTAGGGATTGTGAGAAAACCTTCATTAAGGAATCATACCACACAGACCAGAGGGTACATGCAGGAGTCGGGTCCCATAGATGTAAACAATGTGAGAAATGTTTTCACCAGAAGAACCAGCAAAATGTGCACGAAAGAGTCCCCAGAGAAGCCCGACTCTGGGAAGTTTATCAGTCTGAAAACAGCTTTGGCGAGAAGCCAAATCTCAGGCGCTATCAGAGGACCCGTGCCGGTTATAAGCCCTATGGATGTAACCTGTGTGGGAAGGCATTTTACCGCAAGTCACACCTTGGCAGGCACCAGAAAATTCACACGGGTGAGAAACCCTATGGTTGTGAAGAGTGTAAGAAAACTTTCTACCATAAGTCCTCCCTCACCATACATCAGAGGACTCACACAGGTGAGAAGCCCTACGAGTGTAAAAAATGCAGGAAAACTTTCTACTGTAAGTCGGACCTGAATGTCCACCATAGAACTCACACTGGCGAGAAGCCGTACGAGTGTGACGAATGTAGGAAAACGTTCTACTCTAAGTCACACCTTGTGATACATCAGAAAGTTCACACAGGCGACAAGCCATACGAATGTGAAGAGTGTCAGAAAGCCTTCAGCCGTAAGTCAAACCTTACCGTACATCAGAAAACACATACAGGGGAGAAACCTTACGAGTGCAATGTATGTGGGAAAACTTTTCACCGGCAGTCACACCTCAACATGCACCAGGGGACTCACACTGGCCAGAAACCCTACCAATGCGAAGAGTGTGGGAAAGCGTTCTACCAGAAGTCAAGCCTCAGAAGACATCAGAGAAACCACACGGGGAGCAGACCATATGCATGTGAAGAATGTAGGAAAACCTTCCTCCATAAGTCCTCCCTCACTGTCCATCAGAGAAGCCACACAGGCTACAAGCCATACTCGTGTGAGGAGTGCAGGAAAACGTTTTACAGTAAGTCACATCTCACCGTCCATCAGAGAACCCACACAGGCGAGAAGCCCTATGAGTGTAAGCTATGCAAGAAGGCTTTTCACCAGAAGTCATACCTTAACCGGCATCAGGTAACTCACGGAAGTGAGAAACGATTTGAATGTCAAGAATGTAGGAAAACGTTTTATCACAAGTCTTCCCTCACTGTACATCAGAGAATCCACCTGAGGGAGCTCCTGTGCGTCTGATGTGGGAAGCTCTGTCAGCAGGAACCATCAGCTGGCACCAGACAAGGCATGTGGAGGGCGTCTCCTATAAATGTGACAGTGTGGACAATGTTTTTGCAAGAAAGGACACCTTTGCAAGTGCTAACTTTACACAGGAAATTCTGTGTGGCACAAGTTGGCTGTCTTCTCTGGAACATAGTCCCCATTACTGAGGGTCTGTGTGATCATGTAACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACTGCTTTCATTTCACTGCTTTCAGCCAGGCCCACAGAAATACTTTTTTCTTCCTCCCTAAGTTCTCATGAGCTCTGGGTCTGAGATAAATGTCACCCGTAAGATAGCCTTGACATCCATTGTCAGAAAGTCCCCCATTTAAGAGAAAAAGAACTGACTGGAAATCATTCATTTTTGTCCCCAACTACTCTTTTTTTTTTTTTTTTTTCAGTTTCAAGCTGTTGTGCATGGTGTTTTTGTAAGAATGCACTAACTCAATACAACTGGGAGAACCTACATGCTCTTTAATATTTCAGAGTTTGTACACAAGGGAAACTTTTACAAATTGAGAAAGTTTATCAAAGACGTTTCATTGAACAATTTGAATAAATCAAATGTGAATAAGTTAACAGGTGAAACTTTGAACAAAACTTCCATGTCAGAAGTTTGTAGTGAAGAAAAACCATCAGTCTTTGTAATTTTAATATTAACTTTCAAATGGAGCCACACATGTGCCAATAAATATGTGAGTGATATTATTGTCTGTCAGAGCACATTGTATCTGGGAACATTTGCGGTTATTGTAACTGGAGGCTGGAGTTGCTACTGGCATGCAGTAATAGGGGCCAGCCATATTTTTTAAACAACTTGTACTGCACCAAATATTCCCTCATTCACCTATATATTTTGGTATTTTAATGAAAAATTCCTTGGTGGGACCTAGATTAATTACAGGAAATGTGTTTGCTGTGTATATGTCTTGCTTTGTTAAACAGGGACTGAGGTACGCATGTAGCCCAGTGGTAAGATATATGTGTAACATTCATGAGACCCTGGTTTCAGCCTCACCACATACATGCATAAACTCAAACCTACAAATCTCCACATCAAATACCACTCTAGCATGTGTTCATATTTTCTCAAATATTGTCCTATGCACCTTCCCCACTTTGTGCCAGTGCAAATAAGTATGAGTGGGAATTGCTATTTTACCACCCCTCTAGTGTATGATGCTAATATAAAGCCTGCCAATTGATCTAATGGAAATAGTATTCATATAGAAACGAACAAATGAAGTCCCTGAATTGTTCACAGCTGACACTTAAAGAGCCACAAGCAACAGTTCTTATGTCGGCTTCAGTGCTCTTGGTGAGCAACAATTTGTTGTCCACTTATTTGTGCTCCCCTGGTCCTACACTCCATCCTCCATATGAAAGCGTTGAACAGAAGTGGTCTGTTTTAACTTACCTAGTTTGCACTGAACATTGCTGTGTCACCGACAGCCTAAGTCTTTTGTCACTACACATTTTGCTCTAGCTCTAAAGATGTTTTTACCCTATACATAACTGCCTTGAATAAAAGACTTTGTGTCTAATGT

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000037001-Zfp39:NM_011758:4

Average complexity

IR-S

Mappability confidence:

NA

Protein Impact

Alternative protein isoforms

No structure available

Features

Disorder rate (Iupred):

C1=0.281 A=NA C2=0.178

Domain overlap (PFAM):

C1:

PF0135222=KRAB=PD(0.1=0.0)

A:

NA

C2:

PF079757=C1_4=WD(100=8.8),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF0013017=C1_1=WD(100=11.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF0013017=C1_1=WD(100=10.2),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSMUSP00000099764