BtaINT0007291 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N3N3]
Coordinates
chr3:86407772-86411159:+
Coord C1 exon
chr3:86407772-86407932
Coord A exon
chr3:86407933-86410982
Coord C2 exon
chr3:86410983-86411159
Length
3050 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
AGTTTTATTTGTTCCATCAGCTC
3' ss Score
5.79
Exon sequences
Seq C1 exon
GACAGCCTTTCAACCCTCACTTCAAAATCAACAATGCTGTTTCCAATATTATTTGCTCCATCACCTTCGGGGAGCGGTTTGACTACCAGGATGATCAGTTCCAGGAGCTGCTGAGGCTGCTGGATGAGGTCACCTACTTAGAGACAACAGTGTGGTGCCAG
Seq A exon
GTGAGGCGGTTCTCACTTCCTACCTTGGAGAAGGACAATGAGCTGATGTCAGACAGAGATGGGTTCTTCCTTTTATTTTTTTCTTAAGTTAACACAACCGTTTAAAATTGACTTTGACAAACATGTCTGAAGTCAGTCTGTTGAATTTGATGTTTTGTGTAACATTGATGAACATTGATTATAGACAAAGAGGGCTTCCCAGGTGGCTCAGTGGTTAAAAAAAAAAAAAAAAAATCTACTTGCCAATGCAGGTGACGCTGAAGATGAATTGGGAAGATCCCCTAGAGGAGAAAATGGCAACCCACTCCAGTATTATTGCCTGGAGAATCCCATGGACAGAGGAGCCTGGCAGGCTACAGTCCATGGGTTCACAAAGAGTTAGATGCTACTTTCATATATGCACTAATTACTGGAAAATTGAGTTCAGTAATGGGACTTCAGTGGATACCAGGCTGACTGTTCCCAAGGAATAAAAATCCTGGGAGGTTAGGAGGGAGCAATAGGGCAGGGTAAAAAGCATTTCTTAGAGATCCAAAGTAGACCAGGCACTTTGATGGACAACTATACATACTTTATCTCAGTTAATTTATTTTTTTACAGCAGTTCTTTTTTTTTAAATTTTATTTTATTTTTAAACTTTACAATATTGTATTAGTTTTGCCAAATATCGAAATGAATCCGCCACAGGTATACCTGTGTTCCCCATCCTGAACCCTCCTCCCTCCTCCCTCCCCATACCCTCCCTCTGGGTCGTCCCAGTGCACCAGCTCCAAGCATCCAGTATCGTGCATCGAACCTGGACTGCTGACTCGTTTCATACATGATATTATACATGTTTCAATGCCATTCTCCCAAATCTCCCCACCCTCTCCCTCTCCCACAGAGTCCATAAGACTGATCTATACATCAGTGTCTCTTTTGCTGTCTCGTACACAGGGTTATTGTTACCATCTTTCTAAATTCCATATATATGCGTTAGTATACTGTATTGGTGTTTTTCTTTCTGGCTTACTTCACTCTGTATAATAGGTTCCAGTTTCATCCATCTCATTAGAACTGATTCAAATGTATTCTTTTTAATGGCTGAGTAAATACTCCATTGTGTATATGTACCTCAGCTTTCTTATCCATTCATCTGCTGATGGGCATCTAGGTTGCTTCCATGTCCTGGCTATTATAAACAGTGCTGCAATGAACACTGGGGTACACGTGTCTCTTTCCCTTCTGGTTTCCTCAGTGTGTGTGCCCAGCAGTGGGATTGTTGGATCACAAGGCAGTTCTATTTCCAGTTTTTTAAGGAATCTCCACACTGTTCTCCATAGTGGCTGTACTAGTTTTCATTCCCACCAACAGTGTAAGAGAGTTCCCTTTTCTCCACACCCTCTCCAGCATTTATTGCTTGTAGACTTATGGATTGCAGCCATTCTGACTGGCGTGAAATGGTACCTCATAGTGGTTTTGATTTGCATTTCTCTGATACTGAGTGATGTTGAGCATCTTTTCATGTGTTTGTTAGCCATCTGTATGTCTTCTTTGGAGAAATGTCTATTTAGTTCTTTGGCCCATTTTTTGATTGGGTCATTTATTTTTCTGGAGTTGAGCTGTAGGAGTTGCTTGTATATTTTTGTGATTAGTTGTTTGTCAGTTACTTCATTGGCTATTATTTTCTCCCATTCTGAAGGCTGCCTTTTCACCTTGCTAATGAAATGGATCATCCTGATGTATGCAAGCAGATATGGGAATGTGTAAACAAATCCACATAGTGTTCCACTGGCTCTGTGTTAAGTGTGGTATGGCTCTCATGTCATTTGGTCATGAAAATAACCTTTGCCCCCATTAGCAGCTAGTTTAGGTAGATACAGATCATATCATTATTACTACCATTAGCAAAGTACTATAGCTAGAAAGAAACAGACCTAATTGTAAATGCATACCTATCACATTTGAAATCTAGGCAACTTTCCATTACCTTATGCTATCTATTTTCTTTCATATTTTATTAGAAAAAATATATACAAAGACTACTGTATTTCAGTAAAAAATATTTTACCCACATGGAGCTTACCTCATAGTGAGGACAGACAAATAAATACACATATGTGTTTGCCCTAGATATTTAGATACACAGGAATGTAGATACATAGTTAGATACATATACACAGATAAACATACATATTTTACAAATACACACAAATATATATACACACACAACTAATGACAATTGTCATGGAAAAATATAAAACAAAATAAAGGAATGGAAAGAGAGTTCCAGAAGTGCTGCTAATCGTAGGCTCATCAGCTAAGACGGATCCAAATCGGTGACATTTGAGCAGCACATTAAGGAACTGGAGTTACACAGATTTCAGAGGAAAACCATTCTAGATGAAAGAAATAGCAACTACAAAGTCCTAAACAAGAACATTTTTTTTATGTTTGCACAGAGACCAATGGGGCTGGACTGGAAAGAGTAAGGGAGAGCAAGATGGCAGGGAGTCATAGGAGAGGAGGCGCCAGGAGGGTGAGGGGCCAGATCATGTAGAGCTCCCGGCCAGGAGAATGAGGTAGGATCTGTCTAAATGTCTTGGAAAGTCATTGTCGGATTGAGAGTCAGAAAGTGAAATGATCTCATTAAACTTTTAAATGATCTCTATGGCAGCTCAGTGGAAGACGGGCTGAGAAGGGGGTTAGGGAGAGCATCAGGAAACCTGCTGGAGGCTTACAGCATCCAGATAAAAAATGTTAGTACTTTGTACTAGGATGACAAAGCAGATGGAGTGGTGAAAATTGGTCTGAAGTGTCATGTTTTGGATGGAGGGTTGAAATGCTTTGCTGGAAGGGAAAGAAGAGGGTTGAGAAAGAGAAGAGTCAAGGTTGACTCAAAGGATTAAATTTAAGTAAATAAAAGAGATAGGAAAAGACTACGGTTTCCTTGATGTGTTGCTCAGTTGCTCTCATGTTCAACGCTTTGCAACCCCATGGACTTATCTTAAAAAGTAGAAAAACGTCACCCCCCCCCCTTTCCTCCATGACAGTTTTATTTGTTCCATCAG
Seq C2 exon
CTCTACAATGTCTTTCCAAGGATAATGAATTTCCTTCCGGGTCCACACCAAATGCTCTTCAGTAACTGGAGGAAACTGAAAATGTTTGTTGCCCGTGTGATTGAAAACCACAAGAGAGACTGGAATCCTGCTGAAGCAAGAGACTTCATTGATGCTTATCTCCAGGAGACAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038085:ENSBTAT00000056737:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(15.0=100)
A:
NA
C2:
PF0006717=p450=FE(16.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]