BtaINT0007473 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MI18]
Coordinates
chr5:101223839-101227093:+
Coord C1 exon
chr5:101223839-101223962
Coord A exon
chr5:101223963-101226978
Coord C2 exon
chr5:101226979-101227093
Length
3016 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAT
5' ss Score
7.88
3' ss Seq
TTCTCTTCCTTTCTTTTCAGGCA
3' ss Score
12.34
Exon sequences
Seq C1 exon
ATACACATATGGAAAGCCTGTCCGTGGCCTGGTGACGATTAATGTATGCAGAAAATATTTACAGTACAGTTCTTCCTGTAATGGAAAATATCCAAAAAGCATCTGTGAAGAATTCAGTCAACAG
Seq A exon
GTATATGGAAACTACTCTCCCCAGGACACTAACACCAGATCTTGCTTTCTTGCAACTGATAATACAATAAAGAACACAATACAATGCAACATAATACCATGCGATATGAGAGTAGTATTTGAATTAGTCACCTAGGAAAACTGTGGAATAAGGGAAATATTTTAAGATTGCCTGGCAATAATAAAAACTCACTTGAAGACAGGGCTCATGGATTGCCAGTTTTGCAATTTCCTTCTGATAGCAATCAAAATGCCAGGTGTCCAGGCATAAAAGGATGTGGAAGTCTCCAAAGTTGACTTTAATCAAACAGAAAAGAGAAGAAAAATATGGCAAATGTTAAGAATTGGGCCAGTGGAGAATCAAATGACACTGTGGAATCTAACCTGCATGTGGGAGTCTATGAGATCAGCATCAGGTTGAAGAGAGGGGGACCAAGTGAAAAGATGGATGAGAGTCCTTGATTACATCAAAGATGTAAAGGAAACAGCAGCAGGACATGTATTAAGAAAGAAATGTTAAAAAAAAAAAAAGAAATGAAATGTATGAATTACTAATTTCAGAGGAAGAGTACAAAAAAGGTCAGGGTGAGGCAGTGTGAGCAGACATTGTCAGGTGTGGAAAAGCAAGTTATCTAAGTTGCAGAATGAAAGGCTAAGGTGGTGAACATGATGATGAAGGTCAAGATGAATACTGATAAGCAAGATAAACATGAGAGAAATATAGCTGTCAAAATCTTTATCAAATCAGGGAGACTAAGATTCATTTTCATTTTCAAATGAGTCATGACATCTGTATATAAGTAAATTAAATTGATTAAAGTTGTGCAATAAATATTTCCAGGCAAGAATACTGGAATGGGTAACCATTCCCTTCTCCAGGGAATCTTCTGGACCCGGGGATGGAACCTTGGTCTCCTGCATTGCAGGCAGACTATTTACCATCTGAGCCACCAGGGAAGCCCAAATTAAGTGTGACTAAATTTTACTATGCAATAAATATCATGTAAACAAGTAAAAAATGAAAACAAATCTTTATTATAATATGGATCCCAATGTTTAGTTTAGAAATCTAATTTCTAAAATGAATCATCTAGTCAATAAATATATGTGCTTTCATTAATGTCCTAGATATCAAGAAAACACAGTTAACAATCCCTAGTCAATATTTAGGCTGCCCTGATGACTCAGCAGTAAAGAATCTGCCTGCAATGCAGGAGATGTGGGTTCGATCTTGGGTCAGGAAGATCCCCTGGAGAAGGAAATGCAACCCGGCATTCTTGCCTGGAGAATCCCATGGACAGAGAAGACTGGCGATCTACAGTCTGTGGGGTGGCAAAAGAGTCAGACACAACTGACCCACTGAACAACTACAGTCAATATTTAGGTGGAGATCATTACAGAGGATTCTTAGAACATAGTATGTCTGAGTTGTGTTTAGAAGAGCTGTAACTGTTGGCCACAATGAGAGTGGAAGCAAGAAAAGATATTTAAGGAACAACGTACACAAAGAGATAAAATTACAAAATACCATGGCATGTTGGGAAACACTGAGCTACATTGCCTTCAGTTCAGTTCAGTTCAGTCACTCAGTCGTGTCCGACTCTTTGCCACCCCATGAATCACAGCACACCAGGCCTCCCTGTCCATCACCAACTCCCGGAGTTCACTCAAACTCATGTCCATCGAGTGGGTGATGCCATCCAGCCATCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCCCCAATCTCTCCCAGCATCAGAGTCTTTTCCAATGAGTCAACTCTTCACATGAGGTGGCCAAAGTCCTGGAGTTTCAGCTTTAGCATCAGTCCTTCCAATGAACACCCAGGACTGATCTCCTTTAGAATGGACTGGTTGGGTCTCCTCGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCATAGTTCAAAAGCATCAATTCTTCAGCGCTCAGCTTTCTTCACAGTCCTACTCTCACATCCATACATGACTACTGGAAAAACCATAGCCTTGACTAGACGGACCTTTGTTGGCAAAGTAATGTCTCTGCTTTTTAATATGCTATCTAGGTTGTGAAAGGTTGTTGTTGAATCACGCGAAGACACTGGGATTCTTGGCCCCTGGAGGAGAAGACTTCAATCCGGGGCCAGAGACAAGTCTTGATCGCTCAGAGCTTTTGTGTAATAAAGTTTTATTAAAGTATAAAGGAGATAGAGAAAGCTTCTGACATAGGCATCAGAAGCGGGCAAAAAGAGTAGCCACTTGCTAGTGTTAGCAATGAAGTTATATACTCTCCAGTGAATCCAAAGAATGTCTGGAGGTTGTAAAGACCTCACCAGACCTACTCCCATAATTTACATTTTAAGATAACAGAAGGTTTAATCCAGAGACTGTCCTTAGGCAGGATACATTATTGTTATATAATCCTAAGGAATGTGGAGAAAGAAAAAAGTTTGTTCTTTCTTCCTCCTTGAGAATTCCAGACCCCTCTCTCCTTGGGGACCCCTAGACTCCCTATCAACCTGCCTAGGAAATGACTCTCTCAGTTGGTCATACATTGCATTAGTCGTGTCCAACTCTTTCCGACTCTATGGACTATAGCCCACCAGGCTCCTCTGTCCAAGGGCTTTCCCAGGCAAGAATATTGGAGTCAGTTGCCATGACCTCCTCCAGGGGATCTTACCAATCCAGTAATTGAACCTGCATCTCCTGTGTCTCCTGCATTGGCAGGCAGGTTCTTTATCACTAGCGCCACATAGGAAGGAAAGTTTAATATGACAGAAATGGGATAGGCTTTCAGAAGCAAGGGGAGAAAGCAAAGGTTGGCAATGATTTGATGAAATGATTAGTGAACAAATTTTGTATCACCTGGGGGAAAAGATAAGAACCCAAAAAGTGAACAAAACATTTGTAAATTTTCTTCTGTGGCCAACACAAAATCGTCATTGGTTGAAAACTGACTCTTTTAAATCAGAAATCAGAGAACCCAGGATTTCTCTTCCTTTCTTTTCAG
Seq C2 exon
GCAGATGATGAAGGTTGTTTCACACAACTAGTAAATGCTAAATCACTTCAGCTGAAACAAAAAGGATATGAGAGGACATTACAAGTGGAAGCCAAGGTCAGAGAGGAGGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038461:ENSBTAT00000037743:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]