RnoINT0121177 @ rn6
Intron Retention
Gene
ENSRNOG00000006709 | Pzp
Description
pregnancy-zone protein [Source:RGD Symbol;Acc:628643]
Coordinates
chr4:161839233-161842267:-
Coord C1 exon
chr4:161842144-161842267
Coord A exon
chr4:161839348-161842143
Coord C2 exon
chr4:161839233-161839347
Length
2796 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
AACTCTCCCCTTCTCTTCAGGCA
3' ss Score
9.39
Exon sequences
Seq C1 exon
ATACACATACGGAAAGCCTGTTCCTGGTCTGGTGACAATGAAAGTATGCAGAAAATATACACAGTCCTACTCCAACTGCCATGGCCAACACTCGAAAAGTATCTGTGAAGAATTCAGCAAACAG
Seq A exon
GTATGAAGAAGCCACTCCCTAGTTCTTACTTTGTCATGAGCTATAGTGCTGAGTGCAGCACAAATAGGCATATACTCGAAGTGTCATCAAGCAAGACCTCAGAGTCGGGAGAAGGAATATGAGAATGGTTAGTGGTATCAGGAGCCCAGATGAAGGCGGAGATTCTGAATCTATAACTGGGTCCATTTGGCCAATTTTGTCATTTTTCTTGCCAACAGCAATCAACATGCTGAGTTCTAAAAGAACAAAGTAGCGTTCAACACGACAGAATGAGTCAGGTGTCAAGGACTGAGGGAATACAGTAACACACCATTCCCAAATGACAGAGGGAAAAATACTGAACCGTAAATGAGCATCTGGCCCAGAAGAGGAAGACCCAGAAGACAGCAATTAGAGACCCCTATTATGTCTCAGAGGAGGGATAATGGAGGGAAACGTCTGAGAGTAGAATATCGCATTGAAAGCACTGGATGTGGCTGAGTGTAGAGGCTCAGGCCTGTAATCCTAGTAGCTGGGAAGCAAGGGCAGGAACAGGAGTCCAAGGTCATCCTTGGCTATATAACGAGACCAAAGTTGATGTGGACTGAACGAGAACTCGTCTCAAAAAGAACTTGTGGGGGTTGGGGATTTAGATCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGCCCTAGGGTCAGTCCCCAGCTCCGAAAAAAAGAAAAAAAAAAAAACTTGTGGCCCTGGAGAGACGTCTAGGAGTTAAGAACACTTGTCATTCCTCCTGAGGATCTAGGTTCAATTCCCAACACACACATGTGAACACAACCTCCTGTAACTTCAGTTCCAAGAGTATCCCACACCCTCTTCTAGCTTCCATGGGCTTTGCACGCATGCAGTGCATAGACACACATGCAGGCAAAACACCCAAAGACATAAAATTAAATTAAAGATTCTTAAAGTTGTATGCATGCGTTCTGATTTCAAAGGAAGGGTATGTAAAAACTCAGAGATGGCTGTTAGAGCGAGCACTGTGTAGAAATACAGGAAAGTTACCAAAGCTGCAGAGAGTTAATCAGCGAGAGGCCAAAGTGGAAGGTGTGAGGATAAACAATGGGACAAACACTGATAAACACATCAGTTCACACTCCGGCTGCCCAGAAAATGACTCGTGATGTCTATAAATTCATTAATCATGATGGAATTTTGAGTAGGAGTTGTAGTAGTGGTAGAAGTAGTAGTAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGACTATTCCAAATTGACTTCAAATAGTTCTGCTCCAACCTCCCAAATGCTAGGATTATAAATGTCTGTCAACTTGTGCAAATATGATATAATTAAATTTGTTATGCAATGGATATCTGCAGGTGAGACTTGGAAACAAATCTTTATTAAAACATAGGTCACAACATTTAATTCAAAAATCTGATTGCTATAAGGAATTGTCTAGTCAATGGCTATGCATGTTCCCAATGTCTTAGACATCAAGAAAATACAGGAAGTAACAAGTGCTGGCAAGGACACAGAGAAAGGGGAACCCTTGTGCAGTGGGGAATGTAAGCTACTCCAGGCACTTGTTGAGTAAAGGACTCAGTAAGGGAAGTTCAAAAATTAAAAATAGATCCATCTATGAAACAGCGGGGTGTTTACCCGAAGGATTCACACACCACAGAGTCAACACGCCACGATGGCACATCCACAGTTCTTGCAGCACTGTTCCCGGTAGCTATATTATAAACCAAGTGAGGTGCCAGTCAGTAGAGGAGTGGATAAAGAAACCGTGGTGTGATCTCCAGAAAGGATATGCTTTAGCCACGAACAGAGGCAAGTTGTGTGACTTTGTAGGAAAATGGGCACAACCAGAGATAATTGTGGTGAGTTAAGTCAACCTCAGAAAGGCAAGCATCATGTGTTTCACTCTCATTTGGCTCCCGTCTTTTATAGAGAGAGATATATAATCATGCACGTGTTTACATACAATGGGGAAAAAAGTAGAAAGAGAACTACACAAGCTAGTGGTCCCCAACCATCCTAAATACAGCGACCCTTTCGTACAATGCCTCATGTTGTGGTGACCCCAACCAGAAATTTATTTTTGTTGTTGTAAATGTAATTTTGCTACTGTTGTGAATAGATATACAAATATCTGTGTTTTCTGATAGTCTTAGGTGACTCCTGTAAAAGGGTCGTTCCACCCCCGCCAAAGGGATCACAACCCACAGGTTGAGAACTATGGACCTAGGTGAACACAGGAACAAGGGATAAGGAGTAGGCTGAGGAGAGGAGAAGGGAAAGATGTGTTAAAGTAAATCATATACTTGTATGCAATGAGGTAACGAAACCCAGCGCCATATATGAGGAATGTAGAGCATTCTGTTTAAATATATCATATAAAAGAGAGCACATGGCCAACAGTCAGTGTTTAGCTAGAGGTGGTCATGGAAGCCTCCTATGTTATGCCTGAGGTTAGTGGGAAGAGTGGGGAGAATATTATCATTTGAGGAGTAACATACACAAAGAGCTGTAATTACAAAATATGACGGCACACTTGGAAAATCTAGGAGAGTTGATGTAGAACAAATGGATCCATGTTTTGGAAGAATGGGCGAAGGCTGACTGTAAATAACCCAGAGATTAACAAAGAAACTGTGTCATCCTTGGGGTCGGGAAAGGTAAAACAGCCAAAAGGTATCTGAACGCTAAAACCTTTTTGTAAACTTACAACCGGTATTTTCATGGCAAATCAGAGAGCTCAGGAACTCTCCCCTTCTCTTCAG
Seq C2 exon
GCAGATGAAAAAGGATGTTTCAGACAAGTTGTAAAAACCAAAGTGTTCCAGCCCAGACAGAAAGGCTATGACATGAAGATAGAGGTGGAAGCCAAGATCAAAGAGGACGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006709:ENSRNOT00000009467:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]