MmuINT0130104 @ mm9
Intron Retention
Gene
ENSMUSG00000030359 | Pzp
Description
pregnancy zone protein [Source:MGI Symbol;Acc:MGI:87854]
Coordinates
chr6:128466834-128469533:-
Coord C1 exon
chr6:128469410-128469533
Coord A exon
chr6:128466949-128469409
Coord C2 exon
chr6:128466834-128466948
Length
2461 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
AACTCTCCCCTTCTCTTCAGGCA
3' ss Score
9.39
Exon sequences
Seq C1 exon
ATACACATATGGAAAGCCTGTTCCCGGTCTGGTGACATTGAGAGTGTGCAGAAAATATTCACGATACCGCTCCACCTGCCATAACCAAAACTCAATGAGTATCTGTGAAGAATTCAGCCAACAG
Seq A exon
GTATGTAGTAGCCACTCCCTAGTTCTTACTCTGGCATGAGCTGCAGTGCTAAGTGCAATGCAATAGGACAAACACTTGAAATGTCATCAAGCAAGATGTAGGAGTAGGGAGAAGAAATATGAGAATGGTTGGTGGTATTAGGGGCCCAGATGAAGGCAGAGATTATGAATCTATAACTGCGCCCATTTGGCAAATTTTGTAATTTTCTTGCCAACAGCCATCAACATGCCACGTTCTAAAAGAATAAAGTCGTGTTCAAAGCTGGCTTTTGTCACAGTAGAATGAGGTCGAAGCTGATGTGGGCTGAATGAGAACTAGGCTCAAAAAGAACTAGTGGCCCTGGAGAGACGTCTCAGTAGCTAAGAACACTTGTTGCTCCTGCTGAGGGTCTAGGTTCAATTCCCAACACACACACACACACACACACACACACACACACACACACGGCAACACACAACCTTCTGTAACTCCAGTCCCAGGAGTGTTCTAGCCTCTGTAGGGTTTGCATGCACGTGCTACATAGACACACACGCAGGCAAAACACCTACAAACATAAAATAAAATTAAAGAATCTTAAAGTTGTATGCATGCGTTCTGATTTCAGAGGAAGGATAGGTAAAAAAATGCAGGGATGGCTATTAGAGCCAGCTCTGTATAGAAACTGCAGAAAAGTTACCAAAGCTTCAGGGAGCCAATCAGTCAGAGGCCAAAGTGGAAGGTGTGTGGATAAATGGGACAAACACTGATAAATAACATCAGTTCACACTCTGGCTGTTTAGAAAATGACTCATGGTGTCTATAAATCCATTAATTATGATGGGGTTTGGAGGAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGCGCGCACACTGAGACAAATTTTATAGCCCAGGCTAGCCTTAAATGAACTATGTTTTCCAAACTGACCTCAAATAATTCTCATGCTCCAACCTCCCAAATGCTGGGATTACAAATGTTTGTCAACATGAACTATGATATAATTAAATTTGTTATGCAATGAATATTTGCATGTAAGTATGTACAAATAGGAAACAAATCTTTATTAAGACATAGGTCACCACATTTAATTCAGAAACCTGATTGCTATAAGGATTTGCCTAGCCAATGGCTATGCATATACCAATGTCTTAGACACCAAGAGAATACAGAAAGTGACAAATGCTGGCAAGGACACAGAGAAAACGGAACCCAAGTGCAGTGGGGATGTAAGCCACTGCAGCCACTAAGAAACTCAGAAGGGAAGTTCAAAAAAATAAAAATAGATCTATCATATGAAATACCTGGGTATTTGCCCAAAGGATTCAAACACCACAGAGTCAACACGCCACGCCGGCACATCCACAGTTACTACAGCAGTGCTCTCAACAGCTATGTTATAAACCAGCTGAAGTGTCTGTCAGTGGAGGAGTGGATAAAGAAACTATGGTGTGATCTTCAGAGGGAAATGTTCTAGCCATGAACAGAGGTGGGCTGTGTGACTGTATAGGAAAACGGACACAGCTAGAGAAAACCGTGGTGAGTCAAGTCAACCTCAGAAGAGCAAGCATCGCACGTTGTGCTCTCGTTTGTCGTTCCCACCTTTTATAGAGAGATATATAAAATCATGCATGTGTTTACAGATGATGGGAAAGAAAGTAGAAAGAAAACTACACAGGCTAGTGGTCCTCAACCTTCTTAATACCGCAACCCATTCCTACAGTACCTCGTGTTGTGGTGACCCCAACCAGAAAATTATTTTTGTCGCTACTTCATAACTGTAATTTTGCTACTGTTATGAATAGTAATATAAATACCTGTGTTTCCCAATGGTCTTAGGTGACCCCTGTATAACGGTCATTCCGCATACCCCCAAAGGGGTCACGACCCACCGGTTGAGAACTATGGACCTAGGTGAACACAGGAACTAGGGGTAAGGAGCAGAATGAGAAGAAGAGAGGGAAGAAATGTGTTAAAGTAAACCATATACTTTCATGCATTGAAGTACTGAATCCCAGTACCATATACAAGGAATGTACACCAATATGTTTAAATATCTCATATAGAAGAGAGCACAAGGCCAATAGTCAACATTTAGTTCGAGGTGATTATAGAAGCCTCTTATGCCCAAGTTGAGTGGATAGAATGGAGGGAATGTTATCACCTGAGGAGTAACACCTGCAAAGATCTGTAATTACAATATATGATGGCACCCTTGGAAACTCTAGGATAACTGACATAATGCACATAGTATCCATTTTCCGAAGAGAGGGAAGGCGAGGGTTGGCTGTGAATAATCCAGAGATTAACAAAGTAACAGGGTCAGCCTTGGAGCCAGGAAGAATAAAACAAACAAAGGTACCTGAACGTTTAAAACCTTTTTGTAAACTTATAACCAACATTTTCATGGCAAATCAAAGAACTCGGGAACTCTCCCCTTCTCTTCAG
Seq C2 exon
GCAGATGATAAAGGATGTTTCAGACAAGTTGTAAAAACCAAAGTATTCCAGCTCAGACAAAAAGGCCACGACATGAAGATAGAGGTGGAAGCCAAAATCAAAGAGGAAGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030359-Pzp:NM_007376:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: