BtaINT0007499 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N633]
Coordinates
chr6:85646678-85649838:-
Coord C1 exon
chr6:85649803-85649838
Coord A exon
chr6:85646829-85649802
Coord C2 exon
chr6:85646678-85646828
Length
2974 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
TAATTAAATTGTGCCTCCAGGAA
3' ss Score
7.93
Exon sequences
Seq C1 exon
CAGGTGGCTCCTCTCTGCAGCGCACTGCTTTGCTAG
Seq A exon
GTAAGTTTGAAACTCTGACTAAATGTAAGATTCTGGTTGCAGATCTATTTAGGAGGTCTGTGAAGGTTAACCTAAATGTGTGACATTCACCAAGACTACATGAAATTTACAAGTACCCTCATAATTCAAGGGCAGTGAAGACATTTAAGGGCTTCCTAGGTGACACTAAAGAACTTGCCTGTCAACACAGGAGACTCCAGTTCGATCCTTGCATCAGGAAGATCCCCTGGAGGATGGCATGGCAACCCACTCCAGTACTGTTGCCTGGAGAATCCCCATGGACAGAGGATCCTGGCAGGCTACAGTCCATAAGGTCGCAAAGAGTTGTACACAACTGAAGCAACTGAGCTCACACACATGCAAACAAAGGCATTTAAATGGGAGCAACTAAGGGAAAAGCAAATGGAAGCAATTAACATTTTCCAAATAAGGGCTTTTGCCTGATACTAAGTGCTTTATTTACATCATTTCATGTAATCATAACAATAATTCCATATGAAATGTGTCAGATCAGATCAGTCGCTCAGTAGTGTCTGACTCTTTGTGACCCCATGAATTGCAGCACGCCAGGCCTCCCTGTCCATCACCAACTCCCGGAGTCCACCCAGACTCACGTCCATCGAGTCAGTGATGCCATCCAGCCATCTCATCCTCTGTCATCCCCTTCTCCTCCTGCCCCCAATCCCTCCCAGCATCAGAGTCTTTTCCAATGAGTCAACTCTTCGCAGGAGGTGGCCAAAGGACTGGAGTTTCAGCTTTAGCATCATTCCTTCCAAAGAAATCCCAGGCCTGATCTCCTTCAGAATGTACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCGAAAGCATCAATTCTTCGGCGCTCAGCCTTCTTCACAGTCCAACTCTCACATCCATACATGACCACAGGAAAAACCATAGCCTTGACTAGACGAACCTTTGTTGACAAAGTAATGAAATGTATACTTGAAGCTATTTAAAGATGAGGAAATTGGGTTTAGAAATGGTGATACAACTTGACCAAGATCCTACCACTCTTAAACAGCAGGAACTGAGTGTGAAGTCAGGTATGTCTAAATCCAGTTACAAGGTGCTTATTCGTCTTCTGCTGTAGGGATTTACAATCTAGTTGAAGAAATTTAAATGTGATATATTAAAGGTATTATGCAGGTGGAGTGGTAAGTGTCACACGTACAACACAGATGTTAGTATGCTCTGTGGACACTTGATGAAGATAGAGAACATATTCTAACTGAGATATGCAGTTGCAAGTTTTGTTCCAGACTCTAAAGAGATAAAGTTTGTTGATTGGAGTAGATATATCAGAAAGAATAATGCATATTTTGAGTTGAAAAAATAGTCATCTTCAAATGTGTTGAGATGTAGAGACACAAGTCTTATTCTATGGACAGCAAACAAAAATAACTATTTGAAATAAAGAAGATTTTTAAATGGAAACGTTAGAAAATATGCTTAGAAAATATAGTTTTATTCATCAGGGACACCTCTAAATAACAAGATGCTTACTTACTAAAGAAACACAACTATTGAATGTGTGGAGTCACTGAAGTCTTCAGAATGGGAGAAGGATTCAAGAAGGTCACAGTTACACAAAGATCTTGAAATCTTAAAAAAAATGCACCTGACATTTTGAGGAAAGTGACAGTAATTAAATAGAATGTTAGGGCCTAAATTGAGAAAGAATCTCAGAGGAACTGGAGAATCTGGTCAAAAAATCTAAATTATAAGCCAAGATTCATTGACTTGGTACATATAGTGGAGTGACTGGTGAGAACAAGTTGCAATTTTTTTATGTGTGCAGACAGATGTCAAGAGCCCTGCCACAGGCTCATGGAGTCCAGCGTACATGGCAGTACATGTGATTCTGGACCCCATGCACTGAGGCTGCTCATGTGGTTGCTCCCCAACTCAAATGCATAGAAACCAGATGGGGCTGAAGTAGCAGGAGACATCAGCAACTGTTTAGGAGGATTTGTAGTGGGCTGGGAGTCGGACACTACTGAGCGACTTCACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGTCTGGAGAATCCCAGGGACGGGGGAGCTCCCGTCTATGGGGTCGCACAGAGTCGGACACGACTGAAGCGACTTCAGTCTCAGCAGCAGCAGCAACAGCTCCAATATGGGCTTCCCTGGTGGCTCAGAAGGTAAAGAATCTGCCTGCAATGCAGGAGACCGGGGTTTGATCCCTGGGTTGGAAAGATCCCCTGGAGAAGGAAATGACAATCCACACCAGTACTCTTGCCTGGAGAATTCCATGGATACAAGAGCCTGCTGGGTTACAGTCCACGGGGTTGCAAAGAGTCAGATATGACTGAGCAACTAACACACACACAACATCACCAATACAGGCTTCCCTGGTGGTTCAGATGGTGAAGAACCTGCCTGCAATGAAGGAGACATGGGTTCAATCCCTGGGTCAGAGAGGAGTCTGGTTGGACATGACTTGACAACTAAACAACAAACAAATCTACTAGTCCTTAGTTAGTAGTAGTTAAGTTGCTCAGTCGTGTCTGACTCTTTGCGACCCCATGGACTGTAGCCCACCAGGCTCCTCCGTCCATGGGATTCTCCAGGCAAGAATACTGGAGTGGATTGCCATTTCCTTCTCCAGGGGATCTTCCCTACCCAGGGACTGAACCCAGGTCTCCCGCATTCGAGGCAGACGCTTTAACCTCTGAGCCACGAGGGAAGCTGTTTTTATATGTCTGCAGCATTTATGACATCCCCACATCAAAGACATTTTTAAGATAATAATTTAAGTGCTTTATAGTACTGTTTGGGAAACATAGCTTAAAGTTATAAGATAACCACTGAGAATACCATTTTGACCCACAAATTGAGTGTATTTTAATTAAATTGTGCCTCCAG
Seq C2 exon
GAAAAATCATTCAGAAGATTGGACGGTTGACTTTGGAACTATAGTAAATAAACCGTATATGACACGGAAAGTTCAAAACATTATCATTCATGAAAATTTTAGTGGCCCTGGGATTCATGATGATATTGCTGTTGTACAGCTCGCTGAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038520:ENSBTAT00000054325:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(5.5=100)
A:
NA
C2:
PF0008921=Trypsin=FE(22.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]