BtaINT0007541 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MCD3]
Coordinates
chr7:8471741-8473073:-
Coord C1 exon
chr7:8472803-8473073
Coord A exon
chr7:8471808-8472802
Coord C2 exon
chr7:8471741-8471807
Length
995 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
GGATCTTGCTTTCTCTCCAGGAT
3' ss Score
9.23
Exon sequences
Seq C1 exon
GAAGCCCAATGAATATATTGCCAGCATCTTGGAGCTCAGTGCGCTTGTGGCAAAGCGGAACCAGCAGATCTTCTTGCACATGGACTTTCTGTACTTCCTCACCCCAGACTGGCGGCGCTTCCGCAGGGCCTGCCGCCTGGTACATGACTTCACAGATGCAGTCATTCAGGAGCGGCGCCACACCCTTCCCAGTGAGGGTACTGATGACTTCCTCAAGGCCAAGGTGAAGACCAAGACTTTGGACTTCATCGATGTGCTTCTGTTGACCAAG
Seq A exon
GTGGGTTCCTCTGGGATCTGAGTTTAGGAAGTAGAATGGACTTTTATCTGATCAGAGAACTTAAATAAGATACAGAGGGTACTGGAGAGTCATGGAAGGTGCTTGAGGAAGGGAAGTATGGGTCAGAGAAAAGTTTTAAAGATGATTGTGTGGAATACTGTCTGCAGGGACTGCTATTTCTGAAACTGTCAAGGGCCTGAGACTTTAGTCTACTTCCAAGTTGATAAGTTAGTCTCTGTGTGTGTGTGTGTTGTATGTATGCAGAACCTTGGATCAGAGCAGAGCATTAATTTCAGTAGTCATAGTAGAATTTAGCTCTGGTTCTCCATTTGTAAATTCTTTTGAGGGCACCATGATACTTGTACTTGTACATGCAGCCATGCTAGCATCACAGCAGAATTACCTCCAGATTTTGAGATTTGGAACCCATACAGGACAGCTAATACTTCTGCCCCTTCTTCCCTAAAGTGGGTAGGGAAAGGTATATGGATAGGCATAGGAAGACGGAGAGAGAGAGGGAGAGAGGAGAGAAGAAAAGAGAGATTGTTTGGAGCTTAAATAAATCATCTTTGGTGAGAAAGCAGTCTATGATTCTATAGGTTTAATACCCATTCCCTATCTCCAGGATAAAAAGATCTTTGAATTTACTCACCAAGCCTGTGAGCAGATGTCTTTGGGGACAAGGCTCAATCTCTAGCTTCCAAAACAAGTTGCTAGTTGAGTTGATCATCCTGTAACCCAGGTGGACATTAACTTTTTTCCTCCAAAATCCCTCATCATATCAAAACATAAAAATATGAATGGATCACTGATTCCTATCACCAGGCACAACATAGGAGGCAAAGAAATAGAGACATTTGGAGTGGGCATAAGAGGTCTAGGAGTTCCGGGTGGGCTTGGGTTTCTGGATCGATGATGGAGATTCAGAGGTTTTTGCAGTTTAGGCTCAGGGACTATGAGCTAGTGTGATTCTGGGGATCTTGCTTTCTCTCCAG
Seq C2 exon
GATGAAGATGGGAAGGGATTATCAGATGAAGATATCCGGGCTGAAGCTGACACCTTCATGTTTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038549:ENSBTAT00000036364:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.043
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(19.4=100)
A:
NA
C2:
PF0006717=p450=FE(4.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCAATGAATATATTGCCAGCA
R:
CCTCAAACATGAAGGTGTCAGCT
Band lengths:
336-1331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]