MmuINT0071540 @ mm9
Intron Retention
Gene
ENSMUSG00000062464 | Gm9705
Description
predicted gene 9705 [Source:MGI Symbol;Acc:MGI:3780112]
Coordinates
chr17:32766752-32768310:+
Coord C1 exon
chr17:32766752-32767022
Coord A exon
chr17:32767023-32768243
Coord C2 exon
chr17:32768244-32768310
Length
1221 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGC
5' ss Score
6.3
3' ss Seq
GGGTCTTGTTTTGTCTTCAGGAT
3' ss Score
9.26
Exon sequences
Seq C1 exon
GTCTCCCAGTGAATACATTTCTGCCATCTTGGAACTCAGCTCCCTCGTAATAAAAAGGTCACATCAGCTCTTCTTGTTCGTGGACTTCCTGTATTACCACACTGCTGATGGGCGGCGCTTCCGCAAGGCCTGTGACCTGGTGCACAACTTCACAGATGCTGTCATTAGGGAGAGACGGCACACTCTCTCCAGCCAAAACCATGATGAGTTCTTGAAGTCCAAGACTAAGTCTAAGACTCTGGACTTCATTGACGTTCTCTTGTTGGCCAAG
Seq A exon
GTGTGCTCATGTGGGGTCTGGGTTACAGGAACCATCATGGTCAGTGTTAGATAGAAGCCTGATTTGGCCAGGAAGTCTTGGGGAGTTACAGACTGTGCTTATGAAAACTAGACACCACACAGGGATCCATTTTAGATGTAACTCTTTGAAGGCTCTGCTAAAAGAGCAAACGGTGGGCAGGAAACTAAGGGAGAAATGGAATCAGGCTGTGGAGAAGAGAGAGGAGGCACCTTGTGTGCACAACTGGTCTCAGACTCTGTGTCCTATCACCTGTCTTAGGGTTTCATTGCTGTGAAGGGACAACATGACCAAGGTAACTCTTATAAAGGACAACACTTATTTGGGGCTGGCTTAGAGTTTCAGAGTTTCAGTCCCTTATTATCATGGAGGGAAGCATGGCAGTGTGGAGGCAGACATAGTGCTGGAGCAGGAGCTGAGAGTTGTAAGTCTTCTGAAGGCAGCCAGGAAGAGTCTGTCTTCTGCATCGTAGAGACTGAGCATAAAGAGACCTCAAAGACTGAAGGCATGACCATCTAGAAACTGCCCCACCTGGGGATCCATCCCATAAACAACCACCAAACCCAGACACTATTGCAGATGCCAACAAGAGCTTGCTGACAGGCAAGTGATATAGCTGTCTCCTGAGAGGCTCTGCTAGTGCCTGACTAATACAGAAGTGGATGCTCACAGTCATCCATTAGACAGAGTACAGGGTCCCCAATTAAGGAGCTAGAGAAAGTACCCACAGAGCGGAACGGGTTTGCAGCCCCATAGGAGGAACATCAATATGAACTAACCAGTATCCCTAGAGCTCCCTGGGACTAAACCACCAATCAAAGAAAACACACAGAGAGACTCAAGGCTCTAACTGCATATGTAGCTGAGGATGGCCTAGTCGGTCATCAATGGGAGGAGATGCCCTTGGTCCTGTGAAGGTTCTATGCCCCAGTATAGGGTAGTGCCTGGGACAGGATGTGGGAGTGGGAGGGTTGGGGTGAGGATAGGGTATTTTCGGGGGCAAAACTAGAAAAGGGAATAACATTTGAAATGTAAATAAAGAAAATACCTAATTTAAAATAAAAGGGAGACCTCAAAGCCTACCTACACAGGGACACAGTTCCTCCAGCAAGGCCACACCTCTTCTCTGTGGTCAAGCATTCAAACATGTGGGTGGTCTGCACACACACATGGTGTGAATCGAGGGTCTTGTTTTGTCTTCAG
Seq C2 exon
GATGAACATGGAAAGGAGCTGTCAGATGAGGACATCCGGGCAGAGGCTGACACCTTTATGTTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062464-Gm9705:NM_001100187:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(19.4=100)
A:
NA
C2:
PF0006717=p450=FE(4.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAGTGAATACATTTCTGCCA
R:
TCCAAACATAAAGGTGTCAGCCT
Band lengths:
334-1555
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: