HsaINT0044531 @ hg38
Intron Retention
Gene
ENSG00000186526 | CYP4F8
Description
cytochrome P450 family 4 subfamily F member 8 [Source:HGNC Symbol;Acc:HGNC:2648]
Coordinates
chr19:15623105-15623765:+
Coord C1 exon
chr19:15623105-15623375
Coord A exon
chr19:15623376-15623698
Coord C2 exon
chr19:15623699-15623765
Length
323 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
3' ss Seq
ATTGGGGTTCTTGTCTCCAGGAT
3' ss Score
8.26
Exon sequences
Seq C1 exon
GAAGCCCAGTGAATATATTACTGCGATCATGGAGCTCAGTGCCCTTGTAGTGAAACGGAATAACCAGTTCTTCCGGTACAAGGACTTCCTGTACTTCCTCACTCCCTGTGGACGGCGCTTCCACAGGGCCTGCAGACTGGTGCACGACTTCACAGATGCCGTCATCCAGGAGCGGCGCCGCACCCTCACTAGCCAGGGTGTTGATGACTTCCTCCAAGCCAAGGCCAAGTCCAAGACTTTGGACTTTATTGATGTGCTCCTGCTGAGCGAG
Seq A exon
GTGGGCCTCTCTGGGATCTGAATTCAAGAGGTAAAATGGAGCTTCAGGTCAAATGTCAGATTGAAGGACCGGACTTGATACAGAGGGCACTAAGGAGCCATGGAAGGTGCTCGAAGAAGGGAGGGACAAGTCAGATAAATTTTAGAGGTGATTGCATAGAAAGCTTCCTGGGAAGAACAAACAGGAGGTCGGAAGGAAGCATGTGGGGGTAGATCTGGAGGTGACAAGGGAGGGATCCTTCTGGGATAATGGGTCTTCAGAGACTGTTTCAGTTTAGACTCCAGTGACCCCAGAACTAGTGTGATTGGGGTTCTTGTCTCCAG
Seq C2 exon
GATAAAAATGGTAAAGAGTTGTCAGATGAGGACATAAGAGCAGAAGCTGACACTTTCATGTTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186526:ENST00000325723:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.043
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(19.4=100)
A:
NA
C2:
PF0006717=p450=FE(4.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCAGTGAATATATTACTGCGA
R:
TCCAAACATGAAAGTGTCAGCT
Band lengths:
335-658
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development