BtaINT0007865 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1B8Y5]
Coordinates
chr11:92215374-92217391:-
Coord C1 exon
chr11:92217251-92217391
Coord A exon
chr11:92216035-92217250
Coord C2 exon
chr11:92215374-92216034
Length
1216 bp
Sequences
Splice sites
5' ss Seq
AAAGTAGGC
5' ss Score
5
3' ss Seq
TTGTTCTTCATGTTTCACAGGTT
3' ss Score
9.83
Exon sequences
Seq C1 exon
AAAACGTCCTGATGTAATAACAACAACCAACTGGCTTGCTCCAGTCATATGGGAAGGAACTTACAATAGACCGGTCCTGGAAAAATACTACAAAAGGCTGAACATCACCATAGGCTTGGCTATAATATGTGTTCCTGGAAA
Seq A exon
GTAGGCACTACTAATTAATAGTCACTTTTTTTTTTTTAATTTTGGGAAGAAATGTGGATAAACAAGCACCCATAGACTTTCTACATTTAGAGAGCTATTTATGAATAGCTCTAACCATTATTTCTGGCTGACAGTGTAATTATTTTTAGTGGTTATTTTCTTCAGCCATATCTGAATCCTTAATACTATGTGGGAATCTTTTCATTTATATCCAGTTAGTTTTCACAACAAACTCGATGGTTCTTCTCAGGCCCACAAGATCACTACATTCTCTTTCACTAACCAATACATTTAAGTTTTAGACCCAACTGCTCTACCCTTACCTATTGATGGTTCTTAAGCAACAACGATGGGCTTTGCAGATGGTGCTTGTGGTAAAGAACCCATTTTGCTATTGGCAAATACAGGAGACATAAAAGACGTGGGTTTGATCCCTGGGTTGGAAAGATCCCCTGGAACAGGGCGTGGCAACCTGTTGCCTAAACTCGGCCTCTGTTCACCTGTGCCAAATAGAAACAAGGAGACAGAATTTTGAGTGAAGAAGAAAAGAGTAGCTTTTATTGCTTTGCCAGCAAAGGGGGCCCCAGTGGGCTCATGCCCTGAAGGCCATGTGCCCCACCTTGGAGGGGGTAGTAAGGAGTTTTATAGTGTTCAAGGAGCAAAGCGTGATCAGCTTGTGGACAAGTCTTGAATTGGTTGGCCATCAAGGTGAAGTTTCAAGCATCATCAACCTGCCTCAACCAGTCTAGGGTATATGTTCTTGTGGTCAGCAGTTTTCATCTGGAGGGGGTTCTGCTTCCTATAAAAACAACTTAGGAATGTGTGTCATGCCTTTATATCTTTCAGGAAACTGAGGATTTGGTGATTGTTATGTAGCAGAATTATAGTCTAAATTGTTACCAGTTCCTTAGCCCAACAGCTATTCTTTGCTTCCACATCTTCACATTTCCCAGTCATTAACTCTTGAGTCAGCAGTTTACTTCAAAAGACAAGGATGCAGGGATTTGCACATGGTTTCAAACCCACTCCAGTATTCTTGCCTAGAGACTCCCCTTGGACAGAAAAGTCTGCTGGTGGGCTACAGTCCATAGGGTCACAAAGAGTTGCACATGACTGAAGCAATGTTAGCACGTTTAAATGACAGGTAATTTCCTGATGATTTCCAGCAAAATAAGTCTTTTTTGTTATGTGTTTGTTTGTTCTTCATGTTTCACAG
Seq C2 exon
GTTTTCAAATCAGAGCTTGACTGAGTTCATCCAATCTGCAAATAAGCACTTCATGTTTGGCTACAATGTTATCTTTTACATCTTGCTGGATGGCTTCTCCACCATGCCTTCCATAGTGTTAGGTCCCCTTCGAACATTTAAACTATTTTTATTGGTCAAAAGTGGTATAGAGAAAGATTTTTATTTCACATACATGACGAACTTATTTAACTACATCATATCACACATCCAGTATGAAGTCAACTTTCTCTTCGTTATGAATGCAGACCAGATCTTCAAGGACGATTTTGGAGTGGAAACCCTGGGAAAATCTGTAGCTCAACTTAGTGCATGGTGGTATTTTAAAGATGGTGACACTTTCCCTTATGAGAGAAGAAGTAAATCAGCAGCTTTCATCCCTTTTGAAGAGGGAGATTTCTACTACCATAGTGCAATTTTTGGTGGCACAGTTGAGGAGGTTTTAAACCTCATTGAAGAATATCAGAAAGGAGTTATTCAAGACATTGAAAATCAACTTAGCAGCATATATGAACATCACCTAAACAAATATCTTTTTATCAAGAAACCGACTAAGTTATTATCACCAGAATACAATTGGGATCCAAGTTTTAGAACCCCTCCGCAAATTAAATGTGTCAAGATAGCATGGCAGTCAAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039201:ENSBTAT00000053274:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=FE(16.1=100)
A:
NA
C2:
PF034148=Glyco_transf_6=FE(75.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGAACATCACCATAGGCT
R:
TCCCAGGGTTTCCACTCCAAA
Band lengths:
353-1569
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development