BtaINT0007973 @ bosTau6
Intron Retention
Description
Bos taurus zinc finger protein 177 (ZNF177), mRNA. [Source:RefSeq mRNA;Acc:NM_001102550]
Coordinates
chr7:15324727-15329194:+
Coord C1 exon
chr7:15324727-15325112
Coord A exon
chr7:15325113-15329108
Coord C2 exon
chr7:15329109-15329194
Length
3996 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
AGTTTTTGTTTCTTCTTAAGGCT
3' ss Score
6.43
Exon sequences
Seq C1 exon
CGGCTCGGGTGTGAGGTGAAATTTTCGTTTCATATCGTCCTGTCTCTGTGTGGTCAAGCAGGAGGGGAACAGACCCAAGAGGAGGCTTGAAGTCAAAGGACACTAGCCTCGAAGGCTGCCGGGCGGCGGCCCCTCCTCCGAGAGCTAGGACCCACTCGGCCTGGCGGCAGTTCCGGGAGGAGGCGGGTCCGCCCGGCCTACTCTCCATCGGCTTTGCTCCCGATTTCACAAGCCACCGGAGCAGCCTTTGGGTCCTTACTCCACAAGGAAAAGAAATAGCATCTCCGTCCTTCTCGACACTCCGGCGCCTATGGCCCCCTGTCCCCGTGTCCCGGTGAGCTCTCGGTGGCTTTACTCCGGCCGTGGTTGTCGGTTACTGAAGTTTG
Seq A exon
GTAAGTCATATTCCGTTGGAAACAGAAGAAACCTTTGTAGGTTATTAGGGAGCACGTGTGTTTGATCTAAATAAGAGCAGGAGGGAAGGGATTCATATAAATAATAAATTTACCATATGAGAGCCCCGTAAAGCCCCAAACCTTCAAAATATAGAAGCCTCTGGGAAGGAAGTCGATCGAAGCTGTTTGCCGTTAGTAGCCGCCGTTGGAATTGAATTTATGTAAGATGAGTTTTGACGGGTAGATTTTTCTTCCAGGTATTCATCTAGAATTTCTCTTTTTTTTTTTTTTTTCTTTTTTCGCCCATGCTGCACGGCTGGAGGGATCTTAGTTCCCCCACCAGGAAGGAGATGAACCATGGCCCACGGGATTGACAGTGCGGAGTCCTAACCACTGGACCACCAAGAAATTCCCTCATCTTGAAATTTTTATCTTAAGAAAATTTGTGGTCAATAAAAGGAATATCCATGAATCTAAGTTCACTAAGATTTTGTCTGTCATTTTATATGTATATAAAATGATGAACCATTTAATGGTAAATTGCAGACACTGACTTCTAAGAATGAGGACAGTTTCCTACTAAGAACAAAACTCCATTGTCCATCCAAGAAAATCAAAATTTCTCCAGTTTTCCAAAAGTATATTTTATAGTTGTCGGGTTTTGGACGGAGCTGGGATTCAAATAAGCTGGATTCAAATTGCACATTGCATTTAGGTTTTACATCTGTTTTACCTAAAACATTTGCCAATATTTGTGGTTCCTGCAGTCCAGGAGATTTATATTGAAAAATGTTGGCATTCCCATATGGTAATGTTTTCCTATAATTTCATGTAATTGTGTATCTCATGGACTGTAGACCACCAGGCTCCTCTGTCCGTAGGACTTCCCAGGCAAGTGGGAGTGGGTTGCCATTCCCTCCTCCAGGGGATCTTCTTGACCCAGGGGTCAAACCCAGGTCACCTGCCTTTGCAGGCAGGTTCTTTACCACTGAGTCACCTGATACAGCCAGTAGTATCTAACAAATGTAATGTGATTTTAAAATGTTTAGTAGTCAAATTAGGAGGAAATACACATGTGAAGTTATTTTTAATAATATGTCATAGCTAACCTAATTTACCCAGTTATTAATATATAACTATTGGTGAAATTAATGACCAATGTAGCTAATACAAAGTTATTAGTGAGAAATTGTACATTTCTTTTGTACCAAGTTGTTGGACTCTGATATGTATTTTACACCTAAGCTCACCTCATTTAGTATGGATGCTAAATTTTTATTAGAAATTCTTGATCTGTATTTAGCTTTCAGAAAATTGACTGTTGAAAAAATATTTGGGGAAACCCAGATTGCTCCAAACATACTGAAAGATTTTTTTTAGTAACTGAACAGTTTTATTTCTAAAATTTAATTAAAAGTGAGTAAAATGACAAATTTCAGGCCCTCAGTCTCACTAGCCACATTTCATATTCACGATAGCCACATAGAGCAAGACAATGACTACTGCATTAGACTGCAGGTTTAGAGACTTGAAAATGTCCTAGGTCATGTGTACTTCATGTCATGTCACATCAGGAGGCACATAAATGCAAGTCGTCCACTGTGTATTAGGAGTGCAAAGTGTTTAGTTAAGGTACCCATCTCTGTCTTGCACGGTCACATTTTTCTTTGTGATAATCTGTAGGTGATAAGCTTCCCAGGTGGCTCGGTGGTAAAGAATCTGTCCACAGTGCAGGAATGCTGGTTTGATCCCTTTGTCAGGAAGATCCCCTGGAGAAGGAAATGACAACCCACTCCAGGATTCTTGTCTGGGAAATCCCATGAACAGAAGAGCCTGGTGGGCTAATCTGTGGGGTCACAAAAGAGTTGGACATGACTCAGCAACTAAACAACAACAACAACAATCTGAGGGTGATACTTGGCAACAGGGGAATAATCTGTTGCCCAGCCCTTTGACCCAGTGGTTTTAGCATCACTTGTTGATCTTCACTTCTACCTATTTTTTACATTGAGGTCTTGAAAAGTGCTTTTGGTTGTTGTTGTTTTTCCTAATTCTTTTTCTTTTTCCAAATTTTTCCATTCTCTTGCTGTCAGTCTTTTGTGAACAAGAGCTTTCTCCCCCCACTTACCCTCCCTTCTCTATTTTTTTTCCCCCTTTCAGGGTTTCACAACATATTCCCCTATTTTTCTTTCATTTATCATATTATAAACAGTTGCTGTTATTTGATGCTCAGGCTCTCCCAAACTTGGCCAAGAGTAGGCCTTTTAATTTGATTCATTTGTCCTTTCAACACATCCCTATAAATCTTTGAGCATAAATTCCCAATTCACTTTGAATTTGACTGTTGCTGCTTAGTCACTTCAGTCATATCCAACTCTGTGTGACCCTATGGACTGTAGCCTGCCAGGCTCCTCTGTCCATGGAATTCTCCAGGCAAGAGTACTGGAGTGGGTTGCCATGCCCTCTTTCAGGGTATCTTCCCAAAGCAGGGATCAAACCCAGGTCTCCTGCATTGCAGGCAGATTCTTTACTGCTGAGGCACCAGAGAAGCCCCAAATTTGACTGTTAACAGACCATAATCAATGATTTCTCCAAGAAGCCTGTTTCCTTGTAGACACCAAGGTCTGTATGATACATGGACTCAGTGCTCCTGGGGTTTAATTGTGTCTAGGCCTTTCAGTGGATATCTAAAATAGATATTTTCAGGACTTTTCTGGTGGTCCAGTGCTTAAGACTCCATGCTGCCACTGCAGGGGGCACAAGTTCGATCCCTGGTTGGGGAACTCAGATCCTACATGCCACACAAAGTGGCCAAAAATATAAATAAATAAATAAGGTTTTTTTTTAATGTATAATTTTATATCCTCCTTTCCATATAAATTATATTGTGAACATACTCTCATATTATTCTTCAAAAACCCAGTTAAAATATATCTTCTTACATCATAGGTTCATACTCATATTCCTAGTAAAAATTTTGGGCAACCCAGACCTGCTAAGTTAGTCATTTCCTGCGCACTGTTTCATGATCACTGTCCAGTCATATTGGAGAATTAACAATAATCTTAGGAGTTCAGGCTTTTGAGACACAGTAACCTGGATTCAGGCTCTGGCTCACCACTTCCTAAGTGGTGAATCTTGGACCAATTACTACTGCTGTTTGCACATGAATTGCCTCAACTATTGAATGACAGTAATAATAACTTGATAATCATATGAGCTTTGAATGTTTCCAGTACATAATGGGTACTCAGGAAATGGCAATTATTTATATTCATGCCATCTACAGTTTCTAATGACTTTCACATAATACATAACTGCCGTCTTCCACAGAACGATGGCTAATGAATGATGCTTGATGACAAATCAGTAATGCCTACTGCTTAAAGATTGATGGCATGAGGCAAGACTCCCACTACTGCTTAATCAAGAGGAATTCAACTGTCTTGAAGAGACTTCGGGAATAACATGTATAAGGCAGATTTCACTGTCAGATTCACAGATGCCAGCCTTTGATTTTTTCCCTTGTGGCAAGTACTTGCTGATGCTCCTTTCAGAGACAGTACTTTACTGGCCTGTGAACATAATGTCTTTGTGGCCTGGGTCTACACAGTCCTGCTTCTGGGCTGTCTAGGAGGGTGCTTAAGTATATAACAATATCCTTTTGTGTAAATCCTGGGACGTGGGGAGAAAGGGGTAAGTCTGCCCATTTTTGTGGGAGAAGTTCTGCTTAACTGATGAGACATCACTGTTAGCCAAAAAAATAACCCCAACAATTCTACCTGTCTAGACTTTTATCTGTAAAATGAAATTAGATTATTAAACATTTTTTCCTTTTTACCAAAATCCATTTCTAATTTCAGGTGAAGCGGACTGTAGGGCATTTTATGGCAGCAGTGTGTATGTGTTTACTTAGAATTAGTGTGGGTTGTTTCCAGGCTTGTGAGTATGGGAACTGTGGGCAGCCTGAATTCTCAGTTTTTGTTTCTTCTTAAG
Seq C2 exon
GCTGTCTTAGGACTTTTTCTGTCTTTATGAAGAGACATCAGAAGGGGAAAGGACTGTGACTGGATGTCTTGACAAATTATTTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039493:ENSBTAT00000056477:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]