BtaEX0001286 @ bosTau6
Exon Skipping
Description
Bos taurus zinc finger protein 177 (ZNF177), mRNA. [Source:RefSeq mRNA;Acc:NM_001102550]
Coordinates
chr7:15324727-15331036:+
Coord C1 exon
chr7:15324727-15325112
Coord A exon
chr7:15329109-15329194
Coord C2 exon
chr7:15330953-15331036
Length
86 bp
Sequences
Splice sites
3' ss Seq
AGTTTTTGTTTCTTCTTAAGGCT
3' ss Score
6.43
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
CGGCTCGGGTGTGAGGTGAAATTTTCGTTTCATATCGTCCTGTCTCTGTGTGGTCAAGCAGGAGGGGAACAGACCCAAGAGGAGGCTTGAAGTCAAAGGACACTAGCCTCGAAGGCTGCCGGGCGGCGGCCCCTCCTCCGAGAGCTAGGACCCACTCGGCCTGGCGGCAGTTCCGGGAGGAGGCGGGTCCGCCCGGCCTACTCTCCATCGGCTTTGCTCCCGATTTCACAAGCCACCGGAGCAGCCTTTGGGTCCTTACTCCACAAGGAAAAGAAATAGCATCTCCGTCCTTCTCGACACTCCGGCGCCTATGGCCCCCTGTCCCCGTGTCCCGGTGAGCTCTCGGTGGCTTTACTCCGGCCGTGGTTGTCGGTTACTGAAGTTTG
Seq A exon
GCTGTCTTAGGACTTTTTCTGTCTTTATGAAGAGACATCAGAAGGGGAAAGGACTGTGACTGGATGTCTTGACAAATTATTTTCAA
Seq C2 exon
ATTGGGAGATTTGTCTCAATACCAGAAGGTCAGCACCTCAGTGGGATATTTTGAATGGGAAAAAAGTCCAGCGTGGTAGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039493_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTCTCGACACTCCGGC
R:
CATGTCTACCACGCTGGACTT
Band lengths:
183-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development