HsaEX6092694 @ hg19
Exon Skipping
Gene
ENSG00000188321 | ZNF559
Description
zinc finger protein 559 [Source:HGNC Symbol;Acc:28197]
Coordinates
chr19:9448472-9449995:+
Coord C1 exon
chr19:9448472-9448534
Coord A exon
chr19:9449170-9449258
Coord C2 exon
chr19:9449869-9449995
Length
89 bp
Sequences
Splice sites
3' ss Seq
TTTTATTTCTTCTTCTTAAGATC
3' ss Score
8.28
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
AGAGATGGCTAATGAATGGCGCTTGATGACAGATGAGTAATGCCTGTTGCTGAAAGATTGACG
Seq A exon
ATCATCTTTCTCAAGATGTTTTCTGTCTTCATGAGTCAAAATTTGAAGAGGAAAGGATGGTGGCTGGGTGGTTGACAAATTACTCTCAG
Seq C2 exon
GACTCAGTGACCTTTGAGGATGTGGCTGTGGACTTCACCCAGGAGGAGTGGACTTTGCTGGATCAAACTCAGAGAAACTTATACAGAGATGTGATGCTGGAGAACTATAAGAATCTAGTTGCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188321-'4-6,'4-5,6-6=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGGCTAATGAATGGCGCT
R:
AGTTCTCCAGCATCACATCTCTG
Band lengths:
167-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)