HsaALTD0007467-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000188321 | ZNF559
Description
zinc finger protein 559 [Source:HGNC Symbol;Acc:28197]
Coordinates
chr19:9448472-9449258:+
Coord C1 exon
chr19:9448472-9448534
Coord A exon
NA
Coord C2 exon
chr19:9449170-9449258
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACGGTATGA
5' ss Score
8.54
3' ss Seq
TTTTATTTCTTCTTCTTAAGATC
3' ss Score
8.28
Exon sequences
Seq C1 exon
AGAGATGGCTAATGAATGGCGCTTGATGACAGATGAGTAATGCCTGTTGCTGAAAGATTGACG
Seq A exon
NA
Seq C2 exon
ATCATCTTTCTCAAGATGTTTTCTGTCTTCATGAGTCAAAATTTGAAGAGGAAAGGATGGTGGCTGGGTGGTTGACAAATTACTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188321-4-5,5-5-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGATGGCTAATGAATGGCGC
R:
GTAATTTGTCAACCACCCAGCC
Band lengths:
146-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)