HsaINT0187644 @ hg19
Intron Retention
Gene
ENSG00000188321 | ZNF559
Description
zinc finger protein 559 [Source:HGNC Symbol;Acc:28197]
Coordinates
chr19:9448472-9449258:+
Coord C1 exon
chr19:9448472-9448534
Coord A exon
chr19:9448535-9449169
Coord C2 exon
chr19:9449170-9449258
Length
635 bp
Sequences
Splice sites
5' ss Seq
ACGGTATGA
5' ss Score
8.54
3' ss Seq
TTTTATTTCTTCTTCTTAAGATC
3' ss Score
8.28
Exon sequences
Seq C1 exon
AGAGATGGCTAATGAATGGCGCTTGATGACAGATGAGTAATGCCTGTTGCTGAAAGATTGACG
Seq A exon
GTATGAGGCAAGACTCCCACTACTACTTAATCAAGAGGAATTGAGATTGACTTACCCATAAGTTCAGACAGTGTCTCGAAGAGACTTTGGGAACAAGATATTCAGGCACATTTCACTGTTAGACTCACAGGATGCTGGCCATTGGTCTTTCCCTTTGTGGTAAGTCCGTATTGATGGTCCTTCAAGACGCTGCTTTAACCAGTCTGTGAACAGCTTGTCTTGTGATTAGGGTTTAGGGTCTAAGTGGCCCTGCTTTTGAGATACCTAGAAGAGGCTAAAGTAGATACGAATATTCTGTGGTCTAAATCCTGGGATTTGGGAAGGAGGAGTAAGTATGCAGGCTTTTGTGGAAGAAGTTCTGCTTAATCACATGATCAGTTTCTTTTTTGGCAAATAAGGAAAATGTTAACTTCTCTGGACTTTGTATTCCTTATAAAATGGGATTGTTAAACTCTCTCTCTCCTGGTCATCAAAGCCTGAAGCATATTTTCTGGCTTCAGGTGAGACAGGCTGCTCAGGCATTTTATTATAACGTGTGTGTGTCCACTTAGCATTAGTATGAGGTGGCTTCTTGCCTTGTGAGTATGGAAGCTATCAGCAGCCTGGATTCTCAGATTTTATTTCTTCTTCTTAAG
Seq C2 exon
ATCATCTTTCTCAAGATGTTTTCTGTCTTCATGAGTCAAAATTTGAAGAGGAAAGGATGGTGGCTGGGTGGTTGACAAATTACTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188321-ZNF559:NM_032497:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)