BtaINT0008643 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3X8G1]
Coordinates
chr4:93643427-93645493:+
Coord C1 exon
chr4:93643427-93643847
Coord A exon
chr4:93643848-93645383
Coord C2 exon
chr4:93645384-93645493
Length
1536 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
CCTCTGACATCTTTTCCCAGGCC
3' ss Score
8.33
Exon sequences
Seq C1 exon
ATGTCTCGGCAACTCAGCATGGACACGGTGCGGCAGAACTTCTGGAAGGAGGAATACCTGAGGGAGAAGATGTTGCGCTGCGAGTGGCACCACAAGTACGGGTCCCTGGTGAAGGCCAAGCAGAAGGCCAAGGCTGCAGCCCGCCTGCCGCTCAAGCTGCCAACCCTGCCCCCCAAAGCTCCACTCTCACCCCCGCCCACCCCCAAAGCAGTTCCTTCCAGGGCTTCCAGCCCCGCCCTGGAGGCTCCTATTCAGTCAGAAATGTACCCAGTCCCGCCTGCCACCCGGGCCCTGCTATACGAAGGCATCTCCCACGACTTCCAGGGCCGCTACCGCTACCTCAGCACCCGAAAACTGGACGTGCCAGAGAAACGCTACCTCTTCCCCATCACCACCAACTTCACATATGGCTGGCAGCTGG
Seq A exon
GTGAGCCCCAACCTCCCAGAAATTATCCACCTCACAGAAAACCTGCCACGAGCCACAGCGCTCTTGGCACTAGACACACGAGACACATGGACACTCCTTTTGGGGGCGTCCATTCTAGTGGAGAAACATAAGAGCAAGAGAGGGCCAAGTTCCAGAATGAAACGGCATGATGGGCGAGGAGGCAGGGGCGTGTGGCGCTTTGGGATGGATTGTCAGGAAAGGCCTCAGGACCTAAAGGCCGAGTGAGCTAACTGACAAGGGGGAGGAGCTGGGTTTTATTCTAAGTTTAAGGGGAAGCCATGGCGAGTTTTAAGCAGGTGAATGATACTGATTTACTTAAAAAAAAAAAAATCACCCTGACTGTTCTGTAGGTTGTGGCCTTTTTGGGGTAAGAACAAACTGGCAGATGGTTGAGTTATCCTGGCAAGAAATGACGGTGGCTTGGACTAGAGTGATTAGCAGTTGAGCTGAAATCTATTCTGGATGTGTTTGGAGGAAGACTCAATGGAACTTACTGGTGGTTTGAATGACAGGAGAGAATGCAATGCCAACACGCAGGTGTTTGACTGAAGCAGCTACAGCAAGAGAGACTGGGGGTAGGGAGAGTGCTGGGGGGTGTGAAGGTCAGCGTTGCTATGTTGTGCTGGAGGTGTCGGTGATGTGGCCCTCTGGAGTGAGGTCAGAGCTGAAGGCACAGTTTTGGGGGTTATCAGAATATAGGTGCTCTTTAAAGCCTTGAGAGTGGGTGGGCTCACCCAGGTTGCTCCAGAGGCTGGATCACGCAGGGAGAAGGTGCGGGCTTGGGGGGAACAGTGATATGTAAGGACATGGTATTGGCAAGAAGGCTGTCCATCTGGATTGACTCATAGTCGTTAGTTGGGTGGGAGAGGAGCGAAGGCAGTGGTGTAGTTTGAGCTGAAGAGTCAAGGTGTGGGACAGAGAATATGCCAGGGAGTGTCATGGGTTTGCTGCCTGATGAGAGTTCCTTTGCTGTCTGTGGTCATGAATTTCAAGTGAGACTACTCAGTCAGGTGTTTTCTCCAGTTCCTGCACAGAAAAGGTGGATGATTGAGGATAAACAGTTGAAATTTGGCCTTAACAAAAAATCCCCCCAGGGCCCAAGGATTTGCCCCAGGATTTCCTCTCCCTAAAGGGAGAGGAAAGGAACAATTTCCAAATGAAAGCAGAAGGTAGAAAGAAGCCCTGTCTGCCCCAGAGAAGTCCAGCTCTGTCTGTCCCTGTAGCAAGCATGGCTGGGAGTCCCACCACCCTCCTCTGTGAAGGATTCTGAGGCTGGGGGAGGTGCTGGCACACAGCTGACTGGCATTTGGCCATCACTGCTGACCCGGGTGGGCAGCCAGCCAGCTCCCTGTTTCCCTGTAACTCCCGCTTCTCAGAAGCATTTCTTTTTATTTCTGCACACTTACAAAGTGGATACAACACAGGCAGACTCCTAGGGCTATGCAGGCAGGGCTCCTGTGCTCTGCCGATTCTTTTCCCAGGAACCCACTCCTGGCCTCTGACATCTTTTCCCAG
Seq C2 exon
GCCCCCCAGTGAAGCAAGAACTGGTCTCCTGCAAGATGTGCCGCATTGAATCTTTCTTCCGCAAGAATGGGGCCTTCTCGCTACTGGATCCCCGGGATTTGGCCCTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000045645:ENSBTAT00000066003:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.191 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF148861=FAM183=PU(84.8=90.8)
A:
NA
C2:
PF148861=FAM183=PD(14.6=59.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTACGGGTCCCTGGTGAAG
R:
CAGTTCTTGCTTCACTGGGGG
Band lengths:
351-1887
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]