HsaINT0092922 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr7:128506464-128512101:+
Coord C1 exon
chr7:128506464-128506884
Coord A exon
chr7:128506885-128508719
Coord C2 exon
chr7:128508720-128512101
Length
1835 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
CCTCTGACATCTTTTCCCAGGCC
3' ss Score
8.33
Exon sequences
Seq C1 exon
ATGTCACGGCAGCTCAACATAGACGCGTTACGGCAGAACTTCTGGAAGGAGGAATATCTGAGGGAAAAGATGTTGCGCTGTGAATGGTACCGCAAGTATGGGTCGATGGTGAAGGCCAAGCAGAAGGCTAAGGCTGCAGCCCGCCTGCCCCTCAAACTGCCCACCCTGCACCCCAAAGCCCCACTCTCACCCCCACCCGCCCCCAAGTCAGCCCCTTCCAAGGTGCCCAGCCCTGTCCCAGAGGCGCCTTTTCAGTCGGAAATGTACCCGGTACCACCTATCACCCGAGCCCTGCTGTATGAAGGCATCTCCCACGACTTCCAGGGGCGGTACCGCTACCTCAACACTCGAAAACTGGACATGCCAGAGACGCGATACCTCTTCCCCATCACCACCAGCTTCACGTATGGCTGGCAGCTGG
Seq A exon
GTGAGCCCAACCTCTTGGAAATCACCTCAAAAACAGAGCACTAGCCATGTGCTAGGGAGTGGGCATCCTGGTGAAGGGTCCAGACTATAAACAGAGCAAGGAGATGGCCAAGAAGTGTCGACACGTTCCACAGAACTAGGGAGTGGCGGTGGGCAGGGAGGCAGCGGCCACGTGCTGCTATTTATTGGATTGTCAGGAAAGGCCTTTCTGAGGACCCGAGGCTGAGAGCCAGATGATAAGGATGGGTTTGGATTTTATTTGTTGTGCAGGGAAGCTGATGGAGGGTTCTAAGCAGATTTCAAGAGTGACACTGGTGAACCTTTTAAAAAGTCACCCTGACCTGTATGTAGGCAGTGGCTTTTTCAGGGGAAATGGTAGAATCTGGCACATGAGTTGGGCATCTGTTTGGTTATCCTGTGGTAGTGGCCTGAGGGATCAGCAATAGAGCTGAAATCAATTCAGGATGTTTTGGGGGAAGACTCGGTGGAACTCACCCATGGATAGAATGTGAGAATAAGGGGAAGAGAGATCAATCACCCAGGTGTTTGTTTAGCTAAAGCTGCAGTGACAGGGAAGACTGGGAGAGGTCAGGGCTGGAGCGTGCATGAACAGGTCCTATTTAGCCATGTGTGTTTGGCTATGTTATGCTTGAAGTGTCTGTAGGGTGGCTGTGTCTATAAGTCTGGATTGAAGTCAGAGCTGAAGATGCAAATTCGGAGGTCATTGGAATATAGGTGCTTTTTTTTTTTCTTTTTCTTTTTGAAACAGTCTGACTCTGTCACCCAGGCTGGAATGCAGTGGCACGATCTTGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGAGATTCTTCTGCCTCAGCCTCCCGAGTAGCTGGGACTGCAGGCGTGTGTCACCACGCCCAGCTAATTTTTGTTTTTTTAGTAGAGACAGGGTTTCACCATATTGGCCAGGCTGGTCTCGAACTGCTGACCTCGTAATCTGCCTGTCTCGGCCTCCCAAAGTTCTGGGATTACAGGCATGAGCCACCGGCTGGCCTATAGGTGCTATTTAAATCCATGAGATCTCCTAGGGAGCTCAAGTTGCTGGAATCTGATGGGAGTGGGGGCAGGAGGGCTGAGCCAGAGCGGGTAGGGGATGTCATTGGCAGGAAGCCTGTCCATCTCGGCTGAGTCTTTTTTCTGTGAGGTTGAGTCAAGGCCATCAGCGGGGAGGGAGCTGAGCTGAGGCAGTGGAGTAACTAGAGATGAAGAGGAAAGGTGTGGAACAGGCATGTGCCAGGCAGGGCTGCTGGGCGATGTTGCTGCACGTCCCATTGCTGTCTGTGCTCATGAATGTCAAGTGAGACTCCTCAGCCCTGTACCCTTCTCCAGCTGCTTGAGTGTCTTGCAGAAAAGGTGGATGGTTGGGGATTGACTCAGTTGAGATTTTGCCCCCAAACATCCCTTTCCCCCAGGCCCCTAAAGGGGAAGTCAGGGAAATAACTTTCTAACAAAAGCAGGAGGCGAGCCCTAGAAGCGGGGAGCAGGAGGCCGAAGGAAATCTCATCTCTCCACAGTCTGTCCCTGTGACAAGCAGGCTAGGGTGGCCCCCCTCCCTGCAGGTAGAGGATCCTGAAGCTAGGGTAATGATGGCAGATGGCTGCTGTATCCTGGCATCCAGCCAGCTCCCAGTATTTGCCCATAGCTCCCATTCCTCCAAAGCACTTTCTATTTCTTCCCACAAAGTGGCTACTCCACTGACGGATTCCTAGGGCTGTGCAGACAGACAGGGCTCCCATGCTCTGCGTGTCCCTCCCTCAGGAACCCATGCTTGGCCTCTGACATCTTTTCCCAG
Seq C2 exon
GCCCCCCAGTGAAGCAAGAACTGGTCTCCTGCAAGATGTGCCGCATTGAGTCATTCTTCCGCAAGAACGGGGCCTTCGCACTGCTTGATCCCCGAGACCTGGCCCTCTGACCGTGGGCCAGGTGTGGGCTTAGGGGAGGGAAGAAGAAATAACAGGCCTCCTGGTGGGGCAAAGCTGCTGTGTGTGTCTGTGCCCCTCTGCTCTCCCTGTCCCTGAGGTTGCATTCAGGCCTTTCTGAAACTATCAGACCTGCAAGTTGCCCTCTTGCTTTTTCCGTAACCCTCATCACTTTAATCATCCCTTTGAGGACTCAGCAATGACCAGAGGGTGCTGGGAAGGGCGAGCACTACTTCGCAGGCACGGGATCCTCAGCACCAGGGGAACACAGTAGTTCCAGGAAGTTCTGGGTGTTCCTGGGGAGAGAGCGGCTTGTCATTTCGGAGGCCAGGGAAAGGGGCCTCCTGCCACCGCCACACCCCTCCTTGCCCGCCCCTCACCTGGCCCCGAGGGCCCGCAGCCGCTCCGTCCTCTCCCGATGCATTTGCTCCAGCTGCTCCCGCAGGGCGCGCCGCCGCCCAGCCGCGTCCTCCTGGCGGTGCGGAGCGCTGAGCGTCCGCGGCTCAGTGGGGCGGGCGGGGCAGCACCTGGCACACCTGCCCCTCGCGCCCCGCCGAGTCACTGCCAGAGTGCAGTGCGCTCACTTCAAAGGGACCCGGGCGCGCTAAGCTCGGCCCCTGCCCCGCGCAGGCTCCTTGTGGCCCCACCGCCTTCTAGGGGTCTTGCCTGTGGCGGGAGTTGAGCCGGACTGGGCGGGAGCCCCACGGGGTGAACCCGGCAGTGGCGGTTCCTGGCGATGTGGAGGCGTTCCAGGACCTGCAGAGGCGGCAGTCAGCGTCCGGCCGCCCCTCGGTGCCCCGCCCGCTCCAGGCAGGCCCCGATCCCGGCGTGGGGACACACCCGGAGCCGCTGCTGCTCACGGTCCCGCCGGCGGCGCTGCCGCCTGGCCGCGCTGTGCAGCTCCAGCAGCCGCTGCAGAGCCGTCACCTGCTGCGCCGCGCTTAAGCCCGCAGGCGCCTTGGCGGTGCTGAGGGGCGCCGGCCACGCGGCCTTCAAGGCCTTGGGACGCTCAGGGCCGCCCCACCCGACCCCGGAGGGCACCCGGAAGCCAAGCCTGGCCCACCTCCTGCTCCCCCGGTGCGGGGCCCACTCCAGGGCCCTGCAGCCCGTGCGGATCGCGCTCCAGGCCTGGGGGCCCCGGAGAGCCCCGAGGAGCCCCTGCTGCCCGGATACCTCGGCGCGCAGGGTCGCTGGCATCTCGGCTCCGGCTCCGCGACCTGGGAGCCGCCGCCGGGCCGGGGGCTTCGGGCGGGTAAGCGCAGCCCACGCCCCCTCCCGGGCGGCCCCCAGCTTTGCCACCGCCGGTGCCGACCTTTGTGGCTCGCCTTTGATCATGCTCTGCGTCAGCGTGGTAGTCCTTCTCCGGAGGTTTGGGCTCTCCCTGCCCACAGGCTTTGGAGTCTGTGCTTTCAGGGACCCGCAGGAGTCCCTCGGATGGCTATGGGGGTCGCCTTCCTCTGGGGGCTGCACAGTGGCCTCTCCGGGAGCCACCTCCCAGGCTTGTGAGATATTGCCTTCCCAAGACCGCAGCATCTTCTTCCCTGGACTCTGGGGACTCGCCTTTCCCTGGCACTTAGGACTAAATTCTCTTCGACTCCTCCCTCTGACCCTGAGGAGCCCTTGGGCTCTGGCCCCCGTGTGTCTTCACCTTCTGACTCTGAGGAGCATCTTTGATCTCGCCCCAGGAGGCCTCGGCTCTCTTACGCTGAGGGGTCTCCGCTTTCTGATCCTGAGGGTCCTCCTCTCAGACTCAGGGGTGTCCATCCTTGGTGGTCTTTGAAGTTCTGCTCTCTCCTGGCCCAGGTGCGGGTCCGAGCCCAGCCCTTCAAGGGCATCTTGGGAAGGCAGGTTTTGGGAGGGCAGGTCCCCCGGCCCAGGGGTCCCGGGAGTGAGCTTTCTTTTCTGGGTCTCAGGCTCTGCCTCACTCCTCTCTTCCCTCTGGGCCAGGTCCTGGAAAGGAAAAGCACTTTGGGCCCAGGTTTGAGAGGGAACCTGCAGACCCCAGGGGCCAGCCTTTGCCTGATTCCTGAATTTGTTAAAGCCATTTTATGTAGTGTGGAAGGTGCTTCACTGAAGAGCCTCCTCCTCACCCCAGCAGCCTCCTCCCAGGCAGACCCACCCCTGCCATCCCCAACCTGAGACCCTTGACCTTTTCACCTTGCACTCTGAGCTACCTGGCACCCCAAAACTCCTCCTGGTAGTGGGGTTGAGCTCTTGTAAGGAGCCTGAGGAAGAAAGACCAGTATTGGGAGCTCATGTCCCAGCCCCTCATGCACAGTTCACCTAGACTAGAGCCAGGAAGTTTAGGGAGTCCCAGTGCATGGCTAGGGGTGCCCTGAGGGCGCTGTCTGAACCTCAGGCTGTCACAGTTCATCAATCAGCCAGCCATGCACCTGTCAGGTGTGCCTGCCAACAGCCTGCCCCATCTTTCTCATCCTCCCAGCCAAGGCAGACCACTCCAGAGGGACCTGCACAGCCCCTTCCTCAAGACCACCACAGGAGGCCTGGGAGTGAGAAGGGTCACGGTGCTGGGTGCCTGGGTTCCTCAGCACCGGCCACTCCCACTTTGCCCTGGTGTGCCCATCAGGCCCAGAGAAGAAACCCGCTCTGGGCGTCTTACTTTTTACTCTTATTCAGAAAAACCTTCCTTAGCCTTTTCTTTGTTTCTGACAGCAAAATCAAAGGAAATTCAAGATGAAATTTTAGGCCAGAGCCTGGCCTAAAAACTGCAAGTGTTCATAATTAACAAAAGAAATCTAAAAAAAGAGATGATGTGTTGCCGCTCCCCTGCAGCTGTGGAGGAAGGAGAGCTGTTCTGCATCCATAAAAACCAGTTAAAAGGGATTTCATAAGGTCTGAAATTGAGAACTTTCCCAAGAATACTGCATCTTGTTCTCTTGTGCAATATACAGACGTGTGAATATTCCTAACAGTAACCAAATGGGTGCACTCTCTGTGAAAACGCATCTTTCAAAGAGTTTTTTAAACAAAGGAGACTCCTGGGCCTTTAGAAATAATTGCCACAAACTGCAAAAACAATCTCCAACCTCCCACTTCTGTAATTCTCATCTGTTGTCTTACTAGAAAATTTATTTCTCTGGTAATAATGTTATAATTGATATCCCTGTCTTCTCAAGATGTAAAATACTTGTAAAAACTTCTCTGTCCATCAGAAAATAATTATTGGCACTTTTCTTCTCTCTCATGTGCATGATGGAACAATAAAAAGCTTATGGCTTTGCTAGATCTATTATTTAACAAACAA
VastDB Features
Vast-tools module Information
Secondary ID
-LOC100130705:NM_001195150:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAGGCATCTCCCACGACT
R:
GAATGCAACCTCAGGGACAGG
Band lengths:
349-2184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)