HsaINT0092922 @ hg38
Intron Retention
Gene
ENSG00000272899 | RP11-309L24.4
Description
NA
Coordinates
chr7:128866308-128872044:+
Coord C1 exon
chr7:128866308-128866830
Coord A exon
chr7:128866831-128868665
Coord C2 exon
chr7:128868666-128872044
Length
1835 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
CCTCTGACATCTTTTCCCAGGCC
3' ss Score
8.33
Exon sequences
Seq C1 exon
AGGTGACTGTGCCTGGGCAGCCACTCGCCGTCAGAAGCACTCTGCTTGCTGTGCTCACCCCTCAGCTGTGGCCACCCTGGTGCCACTCCTTCCCTGGCCACCATGTCACGGCAGCTCAACATAGACGCGTTACGGCAGAACTTCTGGAAGGAGGAATATCTGAGGGAAAAGATGTTGCGCTGTGAATGGTACCGCAAGTATGGGTCGATGGTGAAGGCCAAGCAGAAGGCTAAGGCTGCAGCCCGCCTGCCCCTCAAACTGCCCACCCTGCACCCCAAAGCCCCACTCTCACCCCCACCCGCCCCCAAGTCAGCCCCTTCCAAGGTGCCCAGCCCTGTCCCAGAGGCGCCTTTTCAGTCGGAAATGTACCCGGTACCACCTATCACCCGAGCCCTGCTGTATGAAGGCATCTCCCACGACTTCCAGGGGCGGTACCGCTACCTCAACACTCGAAAACTGGACATGCCAGAGACGCGATACCTCTTCCCCATCACCACCAGCTTCACGTATGGCTGGCAGCTGG
Seq A exon
GTGAGCCCAACCTCTTGGAAATCACCTCAAAAACAGAGCACTAGCCATGTGCTAGGGAGTGGGCATCCTGGTGAAGGGTCCAGACTATAAACAGAGCAAGGAGATGGCCAAGAAGTGTCGACACGTTCCACAGAACTAGGGAGTGGCGGTGGGCAGGGAGGCAGCGGCCACGTGCTGCTATTTATTGGATTGTCAGGAAAGGCCTTTCTGAGGACCCGAGGCTGAGAGCCAGATGATAAGGATGGGTTTGGATTTTATTTGTTGTGCAGGGAAGCTGATGGAGGGTTCTAAGCAGATTTCAAGAGTGACACTGGTGAACCTTTTAAAAAGTCACCCTGACCTGTATGTAGGCAGTGGCTTTTTCAGGGGAAATGGTAGAATCTGGCACATGAGTTGGGCATCTGTTTGGTTATCCTGTGGTAGTGGCCTGAGGGATCAGCAATAGAGCTGAAATCAATTCAGGATGTTTTGGGGGAAGACTCGGTGGAACTCACCCATGGATAGAATGTGAGAATAAGGGGAAGAGAGATCAATCACCCAGGTGTTTGTTTAGCTAAAGCTGCAGTGACAGGGAAGACTGGGAGAGGTCAGGGCTGGAGCGTGCATGAACAGGTCCTATTTAGCCATGTGTGTTTGGCTATGTTATGCTTGAAGTGTCTGTAGGGTGGCTGTGTCTATAAGTCTGGATTGAAGTCAGAGCTGAAGATGCAAATTCGGAGGTCATTGGAATATAGGTGCTTTTTTTTTTTCTTTTTCTTTTTGAAACAGTCTGACTCTGTCACCCAGGCTGGAATGCAGTGGCACGATCTTGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGAGATTCTTCTGCCTCAGCCTCCCGAGTAGCTGGGACTGCAGGCGTGTGTCACCACGCCCAGCTAATTTTTGTTTTTTTAGTAGAGACAGGGTTTCACCATATTGGCCAGGCTGGTCTCGAACTGCTGACCTCGTAATCTGCCTGTCTCGGCCTCCCAAAGTTCTGGGATTACAGGCATGAGCCACCGGCTGGCCTATAGGTGCTATTTAAATCCATGAGATCTCCTAGGGAGCTCAAGTTGCTGGAATCTGATGGGAGTGGGGGCAGGAGGGCTGAGCCAGAGCGGGTAGGGGATGTCATTGGCAGGAAGCCTGTCCATCTCGGCTGAGTCTTTTTTCTGTGAGGTTGAGTCAAGGCCATCAGCGGGGAGGGAGCTGAGCTGAGGCAGTGGAGTAACTAGAGATGAAGAGGAAAGGTGTGGAACAGGCATGTGCCAGGCAGGGCTGCTGGGCGATGTTGCTGCACGTCCCATTGCTGTCTGTGCTCATGAATGTCAAGTGAGACTCCTCAGCCCTGTACCCTTCTCCAGCTGCTTGAGTGTCTTGCAGAAAAGGTGGATGGTTGGGGATTGACTCAGTTGAGATTTTGCCCCCAAACATCCCTTTCCCCCAGGCCCCTAAAGGGGAAGTCAGGGAAATAACTTTCTAACAAAAGCAGGAGGCGAGCCCTAGAAGCGGGGAGCAGGAGGCCGAAGGAAATCTCATCTCTCCACAGTCTGTCCCTGTGACAAGCAGGCTAGGGTGGCCCCCCTCCCTGCAGGTAGAGGATCCTGAAGCTAGGGTAATGATGGCAGATGGCTGCTGTATCCTGGCATCCAGCCAGCTCCCAGTATTTGCCCATAGCTCCCATTCCTCCAAAGCACTTTCTATTTCTTCCCACAAAGTGGCTACTCCACTGACGGATTCCTAGGGCTGTGCAGACAGACAGGGCTCCCATGCTCTGCGTGTCCCTCCCTCAGGAACCCATGCTTGGCCTCTGACATCTTTTCCCAG
Seq C2 exon
GCCCCCCAGTGAAGCAAGAACTGGTCTCCTGCAAGATGTGCCGCATTGAGTCATTCTTCCGCAAGAACGGGGCCTTCGCACTGCTTGATCCCCGAGACCTGGCCCTCTGACCGTGGGCCAGGTGTGGGCTTAGGGGAGGGAAGAAGAAATAACAGGCCTCCTGGTGGGGCAAAGCTGCTGTGTGTGTCTGTGCCCCTCTGCTCTCCCTGTCCCTGAGGTTGCATTCAGGCCTTTCTGAAACTATCAGACCTGCAAGTTGCCCTCTTGCTTTTTCCGTAACCCTCATCACTTTAATCATCCCTTTGAGGACTCAGCAATGACCAGAGGGTGCTGGGAAGGGCGAGCACTACTTCGCAGGCACGGGATCCTCAGCACCAGGGGAACACAGTAGTTCCAGGAAGTTCTGGGTGTTCCTGGGGAGAGAGCGGCTTGTCATTTCGGAGGCCAGGGAAAGGGGCCTCCTGCCACCGCCACACCCCTCCTTGCCCGCCCCTCACCTGGCCCCGAGGGCCCGCAGCCGCTCCGTCCTCTCCCGATGCATTTGCTCCAGCTGCTCCCGCAGGGCGCGCCGCCGCCCAGCCGCGTCCTCCTGGCGGTGCGGAGCGCTGAGCGTCCGCGGCTCAGTGGGGCGGGCGGGGCAGCACCTGGCACACCTGCCCCTCGCGCCCCGCCGAGTCACTGCCAGAGTGCAGTGCGCTCACTTCAAAGGGACCCGGGCGCGCTAAGCTCGGCCCCTGCCCCGCGCAGGCTCCTTGTGGCCCCACCGCCTTCTAGGGGTCTTGCCTGTGGCGGGAGTTGAGCCGGACTGGGCGGGAGCCCCACGGGGTGAACCCGGCAGTGGCGGTTCCTGGCGATGTGGAGGCGTTCCAGGACCTGCAGAGGCGGCAGTCAGCGTCCGGCCGCCCCTCGGTGCCCCGCCCGCTCCAGGCAGGCCCCGATCCCGGCGTGGGGACACACCCGGAGCCGCTGCTGCTCACGGTCCCGCCGGCGGCGCTGCCGCCTGGCCGCGCTGTGCAGCTCCAGCAGCCGCTGCAGAGCCGTCACCTGCTGCGCCGCGCTTAAGCCCGCAGGCGCCTTGGCGGTGCTGAGGGGCGCCGGCCACGCGGCCTTCAAGGCCTTGGGACGCTCAGGGCCGCCCCACCCGACCCCGGAGGGCACCCGGAAGCCAAGCCTGGCCCACCTCCTGCTCCCCCGGTGCGGGGCCCACTCCAGGGCCCTGCAGCCCGTGCGGATCGCGCTCCAGGCCTGGGGGCCCCGGAGAGCCCCGAGGAGCCCCTGCTGCCCGGATACCTCGGCGCGCAGGGTCGCTGGCATCTCGGCTCCGGCTCCGCGACCTGGGAGCCGCCGCCGGGCCGGGGGCTTCGGGCGGGTAAGCGCAGCCCACGCCCCCTCCCGGGCGGCCCCCAGCTTTGCCACCGCCGGTGCCGACCTTTGTGGCTCGCCTTTGATCATGCTCTGCGTCAGCGTGGTAGTCCTTCTCCGGAGGTTTGGGCTCTCCCTGCCCACAGGCTTTGGAGTCTGTGCTTTCAGGGACCCGCAGGAGTCCCTCGGATGGCTATGGGGGTCGCCTTCCTCTGGGGGCTGCACAGTGGCCTCTCCGGGAGCCACCTCCCAGGCTTGTGAGATATTGCCTTCCCAAGACCGCAGCATCTTCTTCCCTGGACTCTGGGGACTCGCCTTTCCCTGGCACTTAGGACTAAATTCTCTTCGACTCCTCCCTCTGACCCTGAGGAGCCCTTGGGCTCTGGCCCCCGTGTGTCTTCACCTTCTGACTCTGAGGAGCATCTTTGATCTCGCCCCAGGAGGCCTCGGCTCTCTTACGCTGAGGGGTCTCCGCTTTCTGATCCTGAGGGTCCTCCTCTCAGACTCAGGGGTGTCCATCCTTGGTGGTCTTTGAAGTTCTGCTCTCTCCTGGCCCAGGTGCGGGTCCGAGCCCAGCCCTTCAAGGGCATCTTGGGAAGGCAGGTTTTGGGAGGGCAGGTCCCCCGGCCCAGGGGTCCCGGGAGTGAGCTTTCTTTTCTGGGTCTCAGGCTCTGCCTCACTCCTCTCTTCCCTCTGGGCCAGGTCCTGGAAAGGAAAAGCACTTTGGGCCCAGGTTTGAGAGGGAACCTGCAGACCCCAGGGGCCAGCCTTTGCCTGATTCCTGAATTTGTTAAAGCCATTTTATGTAGTGTGGAAGGTGCTTCACTGAAGAGCCTCCTCCTCACCCCAGCAGCCTCCTCCCAGGCAGACCCACCCCTGCCATCCCCAACCTGAGACCCTTGACCTTTTCACCTTGCACTCTGAGCTACCTGGCACCCCAAAACTCCTCCTGGTAGTGGGGTTGAGCTCTTGTAAGGAGCCTGAGGAAGAAAGACCAGTATTGGGAGCTCATGTCCCAGCCCCTCATGCACAGTTCACCTAGACTAGAGCCAGGAAGTTTAGGGAGTCCCAGTGCATGGCTAGGGGTGCCCTGAGGGCGCTGTCTGAACCTCAGGCTGTCACAGTTCATCAATCAGCCAGCCATGCACCTGTCAGGTGTGCCTGCCAACAGCCTGCCCCATCTTTCTCATCCTCCCAGCCAAGGCAGACCACTCCAGAGGGACCTGCACAGCCCCTTCCTCAAGACCACCACAGGAGGCCTGGGAGTGAGAAGGGTCACGGTGCTGGGTGCCTGGGTTCCTCAGCACCGGCCACTCCCACTTTGCCCTGGTGTGCCCATCAGGCCCAGAGAAGAAACCCGCTCTGGGCGTCTTACTTTTTACTCTTATTCAGAAAAACCTTCCTTAGCCTTTTCTTTGTTTCTGACAGCAAAATCAAAGGAAATTCAAGATGAAATTTTAGGCCAGAGCCTGGCCTAAAAACTGCAAGTGTTCATAATTAACAAAAGAAATCTAAAAAAAGAGATGATGTGTTGCCGCTCCCCTGCAGCTGTGGAGGAAGGAGAGCTGTTCTGCATCCATAAAAACCAGTTAAAAGGGATTTCATAAGGTCTGAAATTGAGAACTTTCCCAAGAATACTGCATCTTGTTCTCTTGTGCAATATACAGACGTGTGAATATTCCTAACAGTAACCAAATGGGTGCACTCTCTGTGAAAACGCATCTTTCAAAGAGTTTTTTAAACAAAGGAGACTCCTGGGCCTTTAGAAATAATTGCCACAAACTGCAAAAACAATCTCCAACCTCCCACTTCTGTAATTCTCATCTGTTGTCTTACTAGAAAATTTATTTCTCTGGTAATAATGTTATAATTGATATCCCTGTCTTCTCAAGATGTAAAATACTTGTAAAAACTTCTCTGTCCATCAGAAAATAATTATTGGCACTTTTCTTCTCTCTCATGTGCATGATGGAACAATAAAAAGCTTATGGCTTTGCTAGATCTATTATTTAACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000272899:ENST00000609480:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.149 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF148861=FAM183=PU(77.7=56.7)
A:
NA
C2:
PF148861=FAM183=PD(21.4=59.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAGGCATCTCCCACGACT
R:
GAATGCAACCTCAGGGACAGG
Band lengths:
349-2184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains