BtaINT0008972 @ bosTau6
Intron Retention
Description
Quinone oxidoreductase-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:A6QQF5]
Coordinates
chr16:60861504-60863941:-
Coord C1 exon
chr16:60863845-60863941
Coord A exon
chr16:60861563-60863844
Coord C2 exon
chr16:60861504-60861562
Length
2282 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
ATTTTTAAAATTTGTTTTAGGAA
3' ss Score
9.25
Exon sequences
Seq C1 exon
GTCAGAGTTAATGTTCATTTCTGTGGGATTAACTTTGCTGATATTTTGGCGTGTCAGGGTCAGTATCAGGAGAGGCATCAACTTCCCTTCACACCCG
Seq A exon
GTGAGTATGAAAGGGCAAAGTGATTGCTTCAAAAAGAGAAGATATAGAGACTTTTAAAAGAGCTGCCTGATGGACATGTCAGATCAGATCAGATCAGATCAGTTGCTCAGTTGTGTCCGACCCTTTGCGACCCCATGAATCGCAGCACGCCAGGCCTCCCTGTCCATCACCAACTCCCAGAGTTCACTCAGACTCACATCCATCGAGTCAGTGATGCCATCCAGCCATCTCATCCTCTGTCGTCCCCTTCTCCTGCCCCCAATCCCTCCCAACATCAGAGTCTTTTCCAATGAGTCAACTCTTCGCATGAGGCATGTACACACTGCTATATTTAAAATGGATAACCAACGAGGACCAACTTTACAGCATGTGGAACTCTGCTCAATGTTATGTGGCAGCCTGGATGGGAGTGGGGTTTGGGGGAGAATGGGTACATGTATGGGTGTATCTGAGTTGCTCTGCTGTTCACCTGAAGCTTTCACAACATTGTTAATCAGCTATACCACAAAACAAAAAGTTCAAAAAAAATCATAATTGGTAAAAAAAAAAAAAAGATCCATGTGCTTCATGAGTAGTTCCATGGTGGTGTTTGCCTGCTATCAGTGGTGATTCAGATATGTCAGCTGCGGTACTTCCCTGGTGGTCCGGGGGTTAAGACTCCATGCTTCCAATGCAGGTTTGATCCCTGGTTGGGAAACTAAGATCCCACATGCTGTGTGGTGTGGCCAAAAAAAAAAAAAGACATCTCAGCCTCACTGCTAATTAGAATCACTAGATTCTAGTGATTCTAGTGCTGTGAGGGAAGGTTCTATGACTGTCTTGTTCAACATTATCCTGCCTGCCCACCCTGGCCCCATTAGTACTCTTGTATCTGGCTCATACTAAATACTCAATAAATACTTGATGGATTGATCGATTGAAATACAGTTGACAAGCAATGTTATGTTAGTTTCAGGTGTACCAGTGACGTGACATTTGCATACATTATGAAATGACACTACAATAAGTCTAGTAACCATGTGTCCCATACAGAGTTATTACAATATTACTATTTCCTTCTGCTGTATATTACATCTCTGTGGTTTTATTGTTTTCTAACTAGAGACTTGTACCTCTTAATCCCCTTCACTTACTTCATCCACCCCTTAATAAATACTTTGAAAAGGCATAAATGAACAAATAAAATTTTATGTATTATTATGCTCACCAGAATCCTGATCAGAATCATCAATGGCCATAGTCATTCTCTTTCATTCCTTGATAGTTCCTCAATTTTAATTTTTCAATGAAGGATCATAAACATCTGGTTGCAGCTACAACTCTCAGTCCTCACAAATGCATTCCCCAAGAAACCTAATATCAAAGGATCAGAAAGAAGATATAGAGTTTATCCATTTCTTAGTGGGCTGCTCTCTGACTTGCATTATACTCAATCTGATTACATTTAGATCCCGAGTATGTGGACCAATGACTCATTTTTGTTGGTGAAATTTATTAAAAGAGATATAAGTATAGTTTGGTGTGTATCTATATATATACATAAGTAATATACAGTTATATACTGTAAATATACAGTACATGTATATTTTATACAGATAGACACCACTAAGGATACAGTGATTGCAAAACAGTTGCAGTGTTTTGGCCTTAGGGCATTTGGTTTTGCCTCAACAGTTGGAACCGGTTCCCTCTGTTTGTATTTGCTGACATGCTGGTTGAGGGGGAAGAGGTCTTACTCAATTGAGTTTTTCTTCTGGCAGCTCAAGTGGGAAATGTATGATCATTAAACTCAGAAATTTTGGAGGTGGAGGAGGAAAGAGCAGACAACACCAGTTCATCCAACTGAACCAAGTGCTGTATGCATGAATATAGTTCATGTCCTTGAGGGGCCTCATAGTCCAGAAGAGGAGACCTGGGAACAGATAAATACCATATGATGAATATTATCATGGGGGTGCTGGAGGAGCCCAAGGCCCCAGAGATCATGGTCAAAAGTACTTGTATACTCATGATTCTCTATTTTTTTGCCCATTCTTGAAATTTTCATTTGTGTCATGGTAAGAATGGAACTGCTATAGCTTTTCAAGTTGTATCATGAAATCTTAATTCACTTTCCTGTGTGTTGGGTATAACACTCCTATTCTTCTTCCTGGATGGGGTAGGGGGCAGAACACAAACCCTTTTGGCTCCAGAAAGCTCATAGGACACCCTGTCGATCAGAGTTTTCTTATCTCTCTGGTGCTGGGCTTTACAGATAACCTGATTTTTAAAATTTGTTTTAG
Seq C2 exon
GAATGGAGTTTTCTGGGATGGTACTGGAGACAGGCACAGATGTCAGCACGGTGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046172:ENSBTAT00000064011:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082407=ADH_N=FE(26.7=100)
A:
NA
C2:
PF082407=ADH_N=FE(15.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development