MmuINT0023080 @ mm10
Intron Retention
Gene
ENSMUSG00000033488 | BC026585
Description
cDNA sequence BC026585 [Source:MGI Symbol;Acc:MGI:2448516]
Coordinates
chr1:157461953-157464467:+
Coord C1 exon
chr1:157461953-157462049
Coord A exon
chr1:157462050-157464408
Coord C2 exon
chr1:157464409-157464467
Length
2359 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
TTAATCTTTCAATGTTTTAGGAA
3' ss Score
10.52
Exon sequences
Seq C1 exon
GTCAGAGTTGATGTTCATTTCTGTGGTGTTAACTTTGCTGATATTTTGGCCTGTCGTGGTCAGTATCAGGAAAAGCCTCCTCTTCCCTTTACACCGG
Seq A exon
GTGAGTACGGGGGACCAAGTGACTGCTACTTCAGAAAAGAAGAATTTAGAGTCTTCAGAGCCACACCCATCTTCTCAGACACTACTCCCCACTCTCTGCCAGGCTTGACCAGTGAGGTTTCTGTTATTTATGTCACTATCATTGTTAGAGTAACTACCTCATGACTCTCCCCCTATAGGCCTATTGTGTCCCCAGCTTAGCATTGTACCAATCCATAGATGACACTCAGTGGTCTAGTTAGATTTTCTGTTGCTGGGATAAACCACTCTGACCAGAATCAACTTGGGAAGGAAAGGGTTTATTTGGCTTACACTTCTATCAGGAACTGAAGCAGAAACCATGGAGGAATTGCCCAGGCCCATCTGCCCAGAGATGGTACCACTCCCAGTGGGCTGGACCATTATACATCAATTAGCAATCAAGAAAATGCCCCACAGACATGCCCACAGGCCAGTCTGACTGAGGCAACCCCATAATTGAGACTCCCTCAGATACTTCTGGCCTGTGTCAAGTTGACAGCCAGTACTAACGAGGACATTCACTAACTACTTTAAAATGAATAAATGGGCAACTGTTTACACAGTGTTGTGTTCTCCAGAATTCTTTTCTGTTAACCCTCCTCGGTCCTTTGCCTTCTTAGTGTTGCCTCAGTTACAGTTTTTCTCTGAAGGATCTCGACCATGCTTGCAGCTACAATCTGTAGCCTTATTGGCATAGACCTTAAGAAGCTTAACGCAGAAGGCCCAAAAGGAAGAAGAGGAAGGAAAAAGTTTAGACATATCTTAGTAGCTCACTGTCTGAATTTTACTGTGCTCTGTCTGGTTACTTTTAGACCATTTTTGTTTTTTTCAAGGCAGGTTTTTCTGTGTAGTCCTGACTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAATTCACAGAGATCTACCCACCTCTACCTCCCAAGTGCTGGGTTTAAAGGCATGAGCCACCTCCCCACCCCCCAACTATTTTTAGACCTTAAGTGCATGGATTTTTGTTGTTGAAGTTTATTTAAGGAGATTTAAGTAGAGCTTAGTATGTTTATAGTACATGAATATTTTATAGGGATAAATATAAAGATTATAGTGATTGCATGATTACAACATAGCTGTTATGTTTGGGGTTTTTGGTTGTGTGTTAATACTAGGACCCAGTTCCTTCTGTCTGTGTTTGCTTAGAGACTAGACCAGTGGAAGATGTCACAATTAAGTTATTCCTCTGACAGAGCAAGTAAACTATTCATAAATTTGAGAGGCTCATAAATTGCAGAAGTGGATGAAGAAAGGGCAGATGACACTAATCCATCCTGTTGAACTGAGCGTTGCCTGCATAAACACAGGCCATGTCCTTGAGGACCCCTTCACAGGTCAGCAAAGGACACATGGCAACAGATAAATATCATCTGGTGATCATGGTAGTTGGGGTTGTATAGGAACCCCATGGCCCAGTCAGGGTCAAAAGTACCTGTGTACCAGCGAGTCTCTGTGCTTTTGCATATTCTTGATGTAGGTTAAGAGTTGGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAAGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGTTGGGACAACCATAACTGATGTGTTGTGATCATGAAGTCTTACGCTCATTGTGCTAGGTTTTTGAGTACCACCTTTTACGCTTAGTTAAAATGATGGACATTGAAGGTAACAGCTCAAAAGGAGGAGGTGGCCTGTTGGCCGTGTTTCCTGTGTGCAGGATGCCAGGCTCCAAAGATAACCTATCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTCTCTTTCTCTCTTTCTCTCTTTCTCTCTTTCTCTCTTTCTCCCTTTCTCTTGTTTTTTGTTTTAAAGATTTATTTATTTATTTTATGTCTATGAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGCCATTGGATCCATTTCAGATGGTTGTAACCATCATGTGGTTGCTGGGAATTGAACCCAGGACCTCTGGAAGAGCAGTCAGTGTTCTCAACTGCTACCCAGGTTTTTTTTTTTTTGTTAGTTTGTTTGAGACGGGCTTTCTCTCTGTAGCCCTTGCCATCCTGGAACTAGCTCTGTTACCTGGCTGGCCTGGAGCTCCTGCGTGCTGAGATTAAAGTTGTGTGTCACCACAGCCCAGTTTAGTAACTTAATCTTTCAATGTTTTAG
Seq C2 exon
GAATGGAGTTTTCTGGGGCTGTCTTAGAGACAGGAACAGATGTCAGCACTGTGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033488:ENSMUST00000046743:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082407=ADH_N=FE(26.0=100)
A:
NA
C2:
PF082407=ADH_N=FE(15.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types