GgaINT0036520 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NVJ2]
Coordinates
chr8:6586732-6587736:+
Coord C1 exon
chr8:6586732-6586828
Coord A exon
chr8:6586829-6587677
Coord C2 exon
chr8:6587678-6587736
Length
849 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TACATGTACTTATCCTGCAGGAA
3' ss Score
9.31
Exon sequences
Seq C1 exon
GTCCGTGTGCGTGTCCATTACTCCGGGTTAAATTTTGCTGATATCTTGGCCTGCCAGGGGTTGTACCAGGAGAAACATGCTCCTCCGTTCACCCCTG
Seq A exon
GTGAGTAGGTGACCAGATGTCATGGGTGACCAAGTGTCACATCCTATGGGAATGAGCCACCCTGGAGGTCGAGGATGCTGCTGGTGCTGACTTGAGGCAACTTCTGGGGTCAATAGGATCCCATTCTGGCATCCTCTGGAAAATATTCAGTGTAAAATACTTTGCATTTTCAAAGAGCATTAGTGTGGGGAGAGCAACAGCAGATACCACCTTTGCTGGAAGCTGAGAATATCGAGGCACGGAGTGCTTTGGGGTAGGCTGGGGTACGCTGGGTCCTCCTGTCTGCAGCCCAGAGCTCTTGCAGCTCGGTGACTGCCACAAGCACAGGTGGCAGCAGTGCCACTATAGCATCTGCACAGGGTCAGTCACTGTGCTGGCGGCATCTCCTGTCCGTCTGCAGCATCTGTCCTCTGCAAAAATGCACTGAGATTCCGAATTATAAGGAATTCTTAACTAGAGGTGCTTGCTGTCTCTTGTGCTGATGCTGCCATCTTCTGCCCAGTTGGTGCTTTGCTGCTGAGAACTTCAGATTGTAGAATTTCTGAGGTCGGAAGAGCCCTCTGAAATCATCGTGTGTAGCTTCTGCATGGCCTGGCCCTGGGGCTGCTCCACGGGTGGATGCTCAGCAGCCACTGAAGCAGAGCCCAGGGGTAATTTCCTCACGCTGCACTGTTACAGCTGATGCTTGGGGGGCGTGGGGGTACAGCAGGGCCTGTTGATGGGAGGTTCTCTCCCAAATTCCAGGTGCTGGAAGCAAGAGCTCATGACCTGGGTCTGTTAACTGAGGGTGCTGCTAACTGTGGATGTGAAGGCAGGTTGTGTCAGCATGTACATGTACTTATCCTGCAG
Seq C2 exon
GAATGGAGTTTTCAGGGACTGTAATGGAGACAGGAGAGAACGTCAGTGCTGTGAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004341:ENSGALT00000006927:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF082407=ADH_N=FE(29.1=100)
A:
NA
C2:
PF082407=ADH_N=FE(17.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]