RnoINT0154753 @ rn6
Intron Retention
Gene
ENSRNOG00000005177 | Tp53i3
Description
tumor protein p53 inducible protein 3 [Source:RGD Symbol;Acc:1304982]
Coordinates
chr13:75115115-75117468:+
Coord C1 exon
chr13:75115115-75115211
Coord A exon
chr13:75115212-75117409
Coord C2 exon
chr13:75117410-75117468
Length
2198 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CTAATCTTTGAATGTTTTAGGAA
3' ss Score
8.94
Exon sequences
Seq C1 exon
GTCAGAGTCGATGTTCATTTCTGTGGCATTAACTTTGCTGATAATTTGGTCTGTCGTGGTCAGTATCAGGAAAAGCCTCCTCTTCCCTTTACACCTG
Seq A exon
GTGAGTATGGGGGACCAAGGGACTACCTCAGGAAGAGAAGAATTCTGAGGTCTCCAGAGCCACGTGCGTCTTCTCAGTCACTACTCCTCACTCTCTGCCAGGCTCGACCAGTGAGGTTTCCGTTATTTATGTCTTCATCATCGTTACAGTAACTACCTCATGACCTTCCCGTGCAGGCCTGTTTTGTCCCCAGTTTAGCATTGTACCATCCATAGATGATGCTCAGTGGTCTGGTTTGATTTTCTGTTGCTGGGATAAATAAACTACACTGACCTAAATCAACTTGAGAAAGAAAGGGTTTGTTTGACCCAAGCAGAAACTGTGGAGGACCGAGGCTTGCTCTTGGGCTTGTGTTCAGCTATCCTTCTACTGCCCAGGGCCCTGTGCCCGGAGATGGTGCCACTCCCAGTGGGCTGGACCCTTCTACATCAATGAGCAATCAAGAACACACCCCACAGACATGCCCACAGGCCAATCTGACCGAGGCAACCCCATAATTGACACTCCCTCAGATACTTCTGGGCTGTGTCACGTTGACAGCCAGTGCTAAGAGGACATTCACTAACTACTTTAAAATGAATAGATGGGCAACTGTTTACACAGTGTTGTGTTCTCCAGAATTCTTTTCTGTTAACCCTCGTCAGTCCTTTCCCTTCTCAGTGTTGCCTCAGTGTCAGCTTTTCTCCGAAGGATCTCAAACATGCTTGCAGCTACTATCTGTAGCCTCATCAGCACAGACCTTAAGAAGCTCAATGCAGAAGGTCCAAAGGGAAGAGGAGGAAGGAAAACATTTAGACATGTCTTAGCAGCCCACTGTCTGAATTTTATTGTGCTCTGTCTAGTTACTTTTGGACCATTTTTGGTTTCTCGAGGACAGGATTTCTCTGTGTAGTCCTGACTGTCCTAGAACTCACTCTGTAGACCAGGCTGACTTCAAACTCACAGAGATCCACCCACTTCTGCCTCCCAAGTGCTAGGATTAAAGGCATGAGCCATCCCCCAACCCCCAGCTACTTTTAGACCTTTAGTACCTGGATGAATGACTGATTTTTGTTGTTGAAGTTTATTTAAGGAGATTTAAGTAGAGCTTAGTGTGTTTATAGTACATGAATATTTTATAGGGATAAATATAAAGATTATAGTGATTGCGTGATTGCAACATAGCTGTCATGCTTGAGGTTTTTGGTTGTGTGTTAATACTAGGACCCAGTTCCCTTTGTTTGTGTTTGCTGAAAGAATAGACCAGCAGATGATGTCACAATTAAGTTATTCCCCTGGCAGAGCAAGTAGGAAATGTATAGCTATTATGGTCATAAATTTCAGAGGTGGATGAAGAAAGGGCAGATGATAGTAATGCATCCTGTTGAGCTGAGCACTGTCTGCAAAAACTCAGGTCATGTCCTTGAGAACCTCCTCACAGTTCAGCAAAGGACACATGGCAACAGATAAATATAATCTGGTGATCATGGTAGTTAGGGTTGTATGGAAGCCCAGTGGCCCAGTGGCCCAGTGGTCAGGATCAAAAGTACCTGTGTGCCAGCAAGTCTATGTACACATTCTTGAAATGATCTAGGTCAAGAGTGGGACAACCATAACTTATATGTTGTGATCATGAAATCTTATGCTCATTTTGCTGGTTTTTTTTAGCACCACCTTTTACACTTAGTTAAAATGATGGGCACCGAAAATGTTAACAGCTCCCAAAAGTGGAGGTGGCCTGCCAGTCATGTTTCCTATGTACAGGTTGCCAGGTTCCAAAGATAACCTACATTTCTTTTTTTTTTTTTTTTTTTTTTTTTTGAGCTGAGGACTGAACCCAGGGCCTTGCGCTTGCTAGGCAAGTGCTCTACCACTGAGCTAAATCCCCAACCCCTCTTTTTGATTTTTAAAAAGATTTATTTATTTTATGTCTTTGAGTACACTGTAGCTGTCTTCAGTGGCATTGGATCCCATTACAGATGGCTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTTGAAGAGCAGTCAGTGCTCTCAACCACTACCCAGTTTTTGTTTTGTTTTGTTTGTTTGTTTGAGATGGTTTTCTCTGTGTATCCCTTGCCATTCTGGAACTAGCTCTGTAGACCAGGCTGGCCTTGAGGGCTGAGATGAAAGATGTGTGCCACCACAGCCTGGTTGGTAACCTAATCTTTGAATGTTTTAG
Seq C2 exon
GAATGGAGTTTTCTGGGGTTGTCTTAGAGGCAGGAGCAGATGTCAGCACCGTGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005177:ENSRNOT00000006924:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082407=ADH_N=FE(28.6=100)
A:
NA
C2:
PF082407=ADH_N=PU(12.9=94.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]