RnoEX0092923 @ rn6
Exon Skipping
Gene
ENSRNOG00000005177 | Tp53i3
Description
tumor protein p53 inducible protein 3 [Source:RGD Symbol;Acc:1304982]
Coordinates
chr13:75111920-75118035:+
Coord C1 exon
chr13:75111920-75112028
Coord A exon
chr13:75115115-75115211
Coord C2 exon
chr13:75117970-75118035
Length
97 bp
Sequences
Splice sites
3' ss Seq
GTGCTGTGTTTCTTATGCAGGTC
3' ss Score
11.07
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GCAAGCCGGGCAGGGTCAAAGCCGGCACTACCGAGCTGCAGTCTGCACCGAGTTGAAGCAGCCCCTGACCATTCAAGAGGTGGCTCCTCGCCCTATCGGGCCACAGGAG
Seq A exon
GTCAGAGTCGATGTTCATTTCTGTGGCATTAACTTTGCTGATAATTTGGTCTGTCGTGGTCAGTATCAGGAAAAGCCTCCTCTTCCCTTTACACCTG
Seq C2 exon
GGAGATCGTGTTATTGGAGTGAGTAACTTCCACTCGATGGCCGAACAATGCATCACTGACCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005177_MULTIEX1-5/9=4-7
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082407=ADH_N=PU(1.8=5.4)
A:
PF082407=ADH_N=FE(28.6=100)
C2:
PF082407=ADH_N=FE(18.8=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGTCAAAGCCGGCACTA
R:
GTCAGTGATGCATTGTTCGGC
Band lengths:
159-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]