RnoEX0092925 @ rn6
Exon Skipping
Gene
ENSRNOG00000005177 | Tp53i3
Description
tumor protein p53 inducible protein 3 [Source:RGD Symbol;Acc:1304982]
Coordinates
chr13:75117410-75118832:+
Coord C1 exon
chr13:75117410-75117468
Coord A exon
chr13:75117970-75118035
Coord C2 exon
chr13:75118723-75118832
Length
66 bp
Sequences
Splice sites
3' ss Seq
ATACGTTCTCTTCCCTCCAGGGA
3' ss Score
11.03
5' ss Seq
AAGGTATCT
5' ss Score
7.56
Exon sequences
Seq C1 exon
GAATGGAGTTTTCTGGGGTTGTCTTAGAGGCAGGAGCAGATGTCAGCACCGTGAAAAAG
Seq A exon
GGAGATCGTGTTATTGGAGTGAGTAACTTCCACTCGATGGCCGAACAATGCATCACTGACCAGAAG
Seq C2 exon
ACCCTGTGGCGGATTCCAGAAAACGTCTCTTTGCAAGATGCTGCGGTCCTACCAGTATCTTATGGCACAGCTATTTTGGCTGTAGATCATCGGGCCCGTATCCAGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005177_MULTIEX1-7/9=6-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082407=ADH_N=PU(12.9=94.7)
A:
PF082407=ADH_N=FE(18.8=100)
C2:
PF082407=ADH_N=PD(30.4=91.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTTTTCTGGGGTTGTCT
R:
GGATACGGGCCCGATGATCTA
Band lengths:
159-225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]