GgaEX0005815 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr8:6916107-6916889:+
Coord C1 exon
chr8:6916107-6916165
Coord A exon
chr8:6916520-6916585
Coord C2 exon
chr8:6916780-6916889
Length
66 bp
Sequences
Splice sites
3' ss Seq
CACAGTGACTGTTCTTGCAGGGG
3' ss Score
6.01
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GAATGGAGTTTTCAGGGACTGTAATGGAGACAGGAGAGAACGTCAGTGCTGTGAAGGAG
Seq A exon
GGGCACAGGGTGATTGGTGTGACTGGCATCAGTGCTATGGCAGAGGAGTGCGTTGTCGATGAGAAG
Seq C2 exon
GCACTGTGGCAGATCCCTGACAATGTGTCCAGCGAGGATGCAGCAGTGCTGCCTGTCGCCTATGGCACAGCCTGGCTGGCTCTGCACCACCGAGCACATCTGCAGCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004341-'2-5,'2-3,3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082407=ADH_N=FE(17.3=100)
A:
PF082407=ADH_N=FE(19.1=100)
C2:
PF082407=ADH_N=PD(29.1=86.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGACAGGAGAGAACGTCA
R:
GATGTGCTCGGTGGTGCAG
Band lengths:
135-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]