GgaEX0028952 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr8:6916107-6918463:+
Coord C1 exon
chr8:6916107-6916165
Coord A exon
chr8:6916780-6916889
Coord C2 exon
chr8:6918235-6918463
Length
110 bp
Sequences
Splice sites
3' ss Seq
CCATTGAATCCCACATACAGGCA
3' ss Score
5.61
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
Exon sequences
Seq C1 exon
GAATGGAGTTTTCAGGGACTGTAATGGAGACAGGAGAGAACGTCAGTGCTGTGAAGGAG
Seq A exon
GCACTGTGGCAGATCCCTGACAATGTGTCCAGCGAGGATGCAGCAGTGCTGCCTGTCGCCTATGGCACAGCCTGGCTGGCTCTGCACCACCGAGCACATCTGCAGCCACG
Seq C2 exon
TTTGGCTTGGGAGGGCAGGATTGTGGTGATGGGTTTTGCCGGAGGGAAAATCCCCTCAATTCCTGCCAACCTGCTGCTCCTGAAGAACGTGTCAGCCATGGGAGTGTACTGGAGTCGGTACCAGCAGGAGGACTTCCCTCTTTTCTCCTCTGCCATGTCCTCCCTTCTTCAGTATGGCCGGGAGGGAAAGATCCATCCGCACATTGGAGCAGTCTTCAAGCTGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004341_MULTIEX1-2/4=C1-C2
Average complexity
C3
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082407=ADH_N=FE(17.3=100)
A:
PF082407=ADH_N=PD(29.1=86.5)
C2:
PF0010721=ADH_zinc_N=PD(40.5=68.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGAACGTCAGTGCTGTG
R:
TGAAGACTGCTCCAATGTGCG
Band lengths:
245-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]