RnoEX0092926 @ rn6
Exon Skipping
Gene
ENSRNOG00000005177 | Tp53i3
Description
tumor protein p53 inducible protein 3 [Source:RGD Symbol;Acc:1304982]
Coordinates
chr13:75117970-75124364:+
Coord C1 exon
chr13:75117970-75118035
Coord A exon
chr13:75118723-75118832
Coord C2 exon
chr13:75124183-75124364
Length
110 bp
Sequences
Splice sites
3' ss Seq
GCTGTTATTTCTTTGTACAGACC
3' ss Score
6.93
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GGAGATCGTGTTATTGGAGTGAGTAACTTCCACTCGATGGCCGAACAATGCATCACTGACCAGAAG
Seq A exon
ACCCTGTGGCGGATTCCAGAAAACGTCTCTTTGCAAGATGCTGCGGTCCTACCAGTATCTTATGGCACAGCTATTTTGGCTGTAGATCATCGGGCCCGTATCCAGCCTGG
Seq C2 exon
GTCATAGCTGCAGCTGGGAGCGACGAGAAATGCAAGCTGGCGATGCAGAGGGGAGCACAGTCCGGCGTGAACTACAGCCAGGGCAGCCTGAAGGATGCAGTGAAGAAGCTGGTGGGCAGCAGTGGGGTGAATGTGGCCATTGACATGGTGGGAGGAGATGTCTTCCTGGACTCTCTCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005177_MULTIEX1-8/9=7-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082407=ADH_N=FE(18.8=100)
A:
PF082407=ADH_N=PD(30.4=91.9)
C2:
PF082407=ADH_N=PD(24.3=63.0),PF0010721=ADH_zinc_N=FE(74.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATCGTGTTATTGGAGTGAGT
R:
AGAGAGTCCAGGAAGACATCTCC
Band lengths:
242-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]