MmuEX6028521 @ mm10
Exon Skipping
Gene
ENSMUSG00000033488 | BC026585
Description
cDNA sequence BC026585 [Source:MGI Symbol;Acc:MGI:2448516]
Coordinates
chr1:157464965-157467247:+
Coord C1 exon
chr1:157464965-157465030
Coord A exon
chr1:157465712-157465821
Coord C2 exon
chr1:157467166-157467247
Length
110 bp
Sequences
Splice sites
3' ss Seq
GATGTTATTTCTTTGTACAGACC
3' ss Score
7.02
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
Exon sequences
Seq C1 exon
GGAGATCGAGTTATTGGAGTAAGTAGCTTTCATGCTATGGCGGAGCAGTGCATCACGGACCAGAAG
Seq A exon
ACCCTGTGGCGGATTCCAGAAAATGTCTCTTTGCAAGATGCTGCAGTGTTACCGGTATCTTATGGCACAGCTATTTTGGCTGTAGATCATCGGGCCCGCATCCAGCCCGG
Seq C2 exon
AGAAACTGTTTTAGTGACAGCAGCTGCTGGAGCCACAGGCCTCGCAGTGATAGACGTGGCGACAAATGTGTTCCGCGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033488-'2-16,'2-7,8-16=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.029
Domain overlap (PFAM):
C1:
PF082407=ADH_N=FE(17.1=100)
A:
PF082407=ADH_N=PD(28.4=83.8)
C2:
PF082407=ADH_N=PD(7.3=32.1),PF0010721=ADH_zinc_N=PU(11.9=57.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATCGAGTTATTGGAGTAAGT
R:
CTTGGCGCGGAACACATTTG
Band lengths:
148-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types