MmuEX6028521 @ mm9
Exon Skipping
Gene
ENSMUSG00000033488 | BC026585
Description
cDNA sequence BC026585 [Source:MGI Symbol;Acc:MGI:2448516]
Coordinates
chr1:159395096-159419191:+
Coord C1 exon
chr1:159395096-159395161
Coord A exon
chr1:159395843-159395952
Coord C2 exon
chr1:159418574-159419191
Length
110 bp
Sequences
Splice sites
3' ss Seq
GATGTTATTTCTTTGTACAGACC
3' ss Score
7.02
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
Exon sequences
Seq C1 exon
GGAGATCGAGTTATTGGAGTAAGTAGCTTTCATGCTATGGCGGAGCAGTGCATCACGGACCAGAAG
Seq A exon
ACCCTGTGGCGGATTCCAGAAAATGTCTCTTTGCAAGATGCTGCAGTGTTACCGGTATCTTATGGCACAGCTATTTTGGCTGTAGATCATCGGGCCCGCATCCAGCCCGG
Seq C2 exon
ATCAACGATGCCTTCCTTCATGTGATGCAGCGCAAATCCACGGGCAAGGTGCTCTTGTCCCTCAAGTAAACCCTACCCTGGGCAGACTCCCAAGTCTGCTGTCCCTCCTGCATTTTAAAGGGCTCATCCTTAGTGACCCAGGTGCCGTGTCTTGGTGTCAGTTCTCCTTGCTTCTGCTTTCTTGCTGCCTGTAATCATTGTGGCCACAGACATTCCTGCCTAAACTTAACCCCTTCTGTGAGCAAAAGGTACTGTGAGTTCCTTGAGAAATAGGTACTGTACTGGCTAGTTTTGTGTCAACTTGACACAGCTGGAGTTACCACAGAGAAAGGAGCTTCAGTTGAGGAAATGCCTCCATGAGATCCAGCTGTAAGGCATTTTCTTAATTAGTGATCAAGGGGGAAAGGTCCCTTGTGGGTGGGACCATCTCTGGGCTGGTAGTCTTGGTTCTATAAGAGAGCAAGCTGAGTAAGCCAGGGGAAGCAAGCCAGTAAAGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033488-'4-12,'4-4,5-12=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.018 C2=0.033
Domain overlap (PFAM):
C1:
PF082407=ADH_N=FE(17.1=100)
A:
PF082407=ADH_N=PD(28.4=83.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTTCATGCTATGGCGGAG
R:
TGGCCACAATGATTACAGGCA
Band lengths:
248-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: