GgaEX0028952 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NVJ2]
Coordinates
chr8:6588091-6588699:+
Coord C1 exon
chr8:6588091-6588156
Coord A exon
chr8:6588351-6588460
Coord C2 exon
chr8:6588618-6588699
Length
110 bp
Sequences
Splice sites
3' ss Seq
CCATTGAATCCCACATACAGGCA
3' ss Score
5.61
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
Exon sequences
Seq C1 exon
GGGCACAGGGTGATTGGTGTGACTGGCATCAGTGCTATGGCAGAGGAGTGCGTTGTCGATGAGAAG
Seq A exon
GCACTGTGGCAGATCCCTGACAATGTGTCCAGCGAGGATGCAGCAGTGCTGCCTGTCGCCTATGGCACAGCCTGGCTGGCTCTGCACCACCGAGCACATCTGCAGCCACG
Seq C2 exon
GGAAACAGTGCTGGTGACAGCAGGAGCTGGAGCCACTGGCCTTGCCATCATTGATCTGGCTGTCAACGTGTTCCAGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004341-'6-11,'6-9,7-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082407=ADH_N=FE(19.1=100)
A:
PF082407=ADH_N=PD(29.1=86.5)
C2:
PF0010721=ADH_zinc_N=PU(12.2=57.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGGGTGATTGGTGTGAC
R:
CTTTGCCTGGAACACGTTGAC
Band lengths:
146-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]