GgaINT0036522 @ galGal3
Intron Retention
Description
NA
Coordinates
chr8:6916520-6916889:+
Coord C1 exon
chr8:6916520-6916585
Coord A exon
chr8:6916586-6916779
Coord C2 exon
chr8:6916780-6916889
Length
194 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CCATTGAATCCCACATACAGGCA
3' ss Score
5.61
Exon sequences
Seq C1 exon
GGGCACAGGGTGATTGGTGTGACTGGCATCAGTGCTATGGCAGAGGAGTGCGTTGTCGATGAGAAG
Seq A exon
GTGAGGACACCAAGCATTTGGGTTTCCCTCTGAGTTCAGCGCTTCAGCCCTGCCACAGCTGCACTGGGATACAACACGCTTGGGGCATCTTTTCCAAACAGCATGCAGCTATGAGATGCAAAACCCCTTTAAAACGAGTCCTTTCACATGGCAAGCCCCAGTGATGCTGTCAGCCCATTGAATCCCACATACAG
Seq C2 exon
GCACTGTGGCAGATCCCTGACAATGTGTCCAGCGAGGATGCAGCAGTGCTGCCTGTCGCCTATGGCACAGCCTGGCTGGCTCTGCACCACCGAGCACATCTGCAGCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004341:ENSGALT00000006927:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082407=ADH_N=FE(19.1=100)
A:
NA
C2:
PF082407=ADH_N=PD(29.1=86.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGTGATTGGTGTGACTGG
R:
CAGATGTGCTCGGTGGTGC
Band lengths:
163-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]