BtaINT0008974 @ bosTau6
Intron Retention
Description
Quinone oxidoreductase-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:A6QQF5]
Coordinates
chr16:60859762-60860697:-
Coord C1 exon
chr16:60860632-60860697
Coord A exon
chr16:60859872-60860631
Coord C2 exon
chr16:60859762-60859871
Length
760 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGCC
5' ss Score
7.58
3' ss Seq
CACTGTTATCTCTTTTATAGAAC
3' ss Score
9.36
Exon sequences
Seq C1 exon
GGAGATCGAGTCATTGGCCTGCCTGGCTTTAGTGGTATGGCTGAAGAATGCATCACTGACCACAAG
Seq A exon
GTAGCCCTACTCCTCAATATTCATCCTTGGAGATTCTTTTTCTGCTGTCTTTCATTTTCACCTATCCCTCAGTCCTTCTCCTTTCTTTTTTTGTATTCTTTTGGTTATATCTTGTTTCTCAGCCAAGCACTTCTTTCTTTCAAATGCTAAACCCTTTTTTTTGGTTTGCTTGTTTTGGTGTGACAACCATTGCATAGAGCTTTGTTTGTGTTGAGTGGTTTAATGAAGAAGGGCATTTTGTTTTCTGAGGCCTGGAACAATCGACTGGCTGTCCAACTGGACCATAGTTAGGTGGTTTTGGTAGAAAAACTGGTTTGAAGCCTGGATGTAATGAGCTTCTTCTCCGCACCAAGCTTGTGAAAGACAATCCTCCTGGGAGGTAGCAGGCTGGTGTAGGGGTGTGGCTGTCCAGGATGTGAATGGTGCCCCCTAGTGGTGGCTAGTACACACTTTTTTTTTTTAAACAGCTTTATTTAAGGCAAAATTTTTGTACCTTGTTGTTCACTTAATTATATTAATACCGCAGTGGCATGTGTTATAGCCTGTGCATATTGGTTCCTTCCTGATCCAGATGCCAGCTTTAGGATTTTTGAAAGCTGATGTGCCCAAGTCTTGAAATTGACCATCACTTGCTTGGTCTTGACTGGGCTTGGTTCCTGACATGTGTTGCCCTTTGCAAGTCAAGTCATAATATGTATTGAGCAGCCTTTATGAAGAGGTACAGTGCTTAATCTGTAAGTCACTGTTATCTCTTTTATAG
Seq C2 exon
AACCTGTGGCAGATTCCAGAAAAAGTGTCCCTCCGAGAAGCTGCTGCTCTGCCCGTGTCGTATGGCACTGCTATTTTCGCCCTGGAGCATCGGGCCTGTACCCAGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046172:ENSBTAT00000064011:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082407=ADH_N=FE(17.5=100)
A:
NA
C2:
PF082407=ADH_N=FE(30.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development