MmuINT0023082 @ mm10
Intron Retention
Gene
ENSMUSG00000033488 | BC026585
Description
cDNA sequence BC026585 [Source:MGI Symbol;Acc:MGI:2448516]
Coordinates
chr1:157464965-157465821:+
Coord C1 exon
chr1:157464965-157465030
Coord A exon
chr1:157465031-157465711
Coord C2 exon
chr1:157465712-157465821
Length
681 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCT
5' ss Score
7.56
3' ss Seq
GATGTTATTTCTTTGTACAGACC
3' ss Score
7.02
Exon sequences
Seq C1 exon
GGAGATCGAGTTATTGGAGTAAGTAGCTTTCATGCTATGGCGGAGCAGTGCATCACGGACCAGAAG
Seq A exon
GTATCTCTGACTCTTGGCACTGATGGACACATGGGCGTTTCTTTTTCTCCACTGTTCTCTCTGGTTTCCTTGTCTCTCTTTCTCACACCGTTCTCTCCTCCTTTTGCGTTTGTTTCATTTTATCGTGTTTCCTGACCAAGCAGGTTTTTTTTTCCCTTTAAACGCTAACTTTCTTGACAGCCCTTGCACAGAGTTTTGTTTGTGTAGAGAGCCTTTTGTTCCTTCGTTGGCTATCCATTTGGACCATACTTAGTGAGTTATGGTTGAAAAACTGGTCTAGCACATGGAATTGGATATCATGGACATATTTTCCCATAAAGCTTGTGAAAATGGTCTGAGCTGGGTTGAGCAGGATGTGAATGGTGCCCCCTGGTGGGGCATGTTATATGGAACCCATCCAACTTTACTGGGATACATTTTACATAATAACCTAGAGCCGATTCTCCATCAATTGGCTCCTTTTTGAGCAGATGCCAGCCTTATGGGTTTGAAGTCTGACACACCCAGGTCCTAAACCCTACCTTGGCTTGCTTGGTCCGGACTTGTACTCCTTAGTAGGTGATGATAGACGTGTGCTTCCCATTGCAAATTACTCATCCAATCGAATCATAAGGTTAGCTAGGCAGCTTGTGTATCCAGCTACACATGTTTACTGCCAATCGATGTTATTTCTTTGTACAG
Seq C2 exon
ACCCTGTGGCGGATTCCAGAAAATGTCTCTTTGCAAGATGCTGCAGTGTTACCGGTATCTTATGGCACAGCTATTTTGGCTGTAGATCATCGGGCCCGCATCCAGCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033488:ENSMUST00000046743:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082407=ADH_N=FE(17.1=100)
A:
NA
C2:
PF082407=ADH_N=PD(28.4=83.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types