MmuEX6028522 @ mm9
Exon Skipping
Gene
ENSMUSG00000033488 | BC026585
Description
cDNA sequence BC026585 [Source:MGI Symbol;Acc:MGI:2448516]
Coordinates
chr1:159394540-159395952:+
Coord C1 exon
chr1:159394540-159394598
Coord A exon
chr1:159395096-159395161
Coord C2 exon
chr1:159395843-159395952
Length
66 bp
Sequences
Splice sites
3' ss Seq
ACATGTTTTCTTCCCTCCAGGGA
3' ss Score
11.68
5' ss Seq
AAGGTATCT
5' ss Score
7.56
Exon sequences
Seq C1 exon
GAATGGAGTTTTCTGGGGCTGTCTTAGAGACAGGAACAGATGTCAGCACTGTGAAAAAG
Seq A exon
GGAGATCGAGTTATTGGAGTAAGTAGCTTTCATGCTATGGCGGAGCAGTGCATCACGGACCAGAAG
Seq C2 exon
ACCCTGTGGCGGATTCCAGAAAATGTCTCTTTGCAAGATGCTGCAGTGTTACCGGTATCTTATGGCACAGCTATTTTGGCTGTAGATCATCGGGCCCGCATCCAGCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033488-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
PF082407=ADH_N=FE(15.4=100)
A:
PF082407=ADH_N=FE(17.1=100)
C2:
PF082407=ADH_N=PD(28.4=83.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGTTTTCTGGGGCTGTC
R:
GATGCGGGCCCGATGATCTA
Band lengths:
159-225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: