BtaEX0001442 @ bosTau6
Exon Skipping
Description
Quinone oxidoreductase-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:A6QQF5]
Coordinates
chr16:60853455-60861562:-
Coord C1 exon
chr16:60861504-60861562
Coord A exon
chr16:60860632-60860697
Coord C2 exon
chr16:60853455-60853636
Length
66 bp
Sequences
Splice sites
3' ss Seq
TAATGGCATTTTCCCTCCAGGGA
3' ss Score
7.83
5' ss Seq
AAGGTAGCC
5' ss Score
7.58
Exon sequences
Seq C1 exon
GAATGGAGTTTTCTGGGATGGTACTGGAGACAGGCACAGATGTCAGCACGGTGAAAGAG
Seq A exon
GGAGATCGAGTCATTGGCCTGCCTGGCTTTAGTGGTATGGCTGAAGAATGCATCACTGACCACAAG
Seq C2 exon
GTAATAGCTGCAGCTGGAAGTGATGAAAAGTGTCAGCTGGCGATGCAGAGTGGGGCACAGTCCAGCGTGAACTACAGTCGGGGCAGCCTTAAGGAGGCTGTGGGGAAGCTGGTGGGCAGTGGCGGGGTGAACGTGGTCATTGACATGGTGGGAGGAGACATCTTCCTGGAGGCTCTCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046172_MULTIEX1-2/7=1-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082407=ADH_N=FE(15.8=100)
A:
PF082407=ADH_N=FE(17.5=100)
C2:
PF0010721=ADH_zinc_N=FE(45.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACAGGCACAGATGTCAGC
R:
TGTCAATGACCACGTTCACCC
Band lengths:
178-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development