GgaEX1000888 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr8:6914850-6916165:+
Coord C1 exon
chr8:6914850-6914999
Coord A exon
chr8:6915161-6915257
Coord C2 exon
chr8:6916107-6916165
Length
97 bp
Sequences
Splice sites
3' ss Seq
TTTGTCCCCTTCTCTCGCAGGTC
3' ss Score
12.82
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GCAGTTCCCCTTCACTTGCGTTCCAGGCTCTGCATCCTGAGGCTGCCTGCCCAGCCTCGTGCCCGGGGGTACCGAGCAGCACTCTGCACGCAGCTGACACAGCCCCTGCTGGTGCAGGACCTCCCGGCCCCTCGGCTGCAGCCACGCCAG
Seq A exon
GTCCGTGTGCGTGTCCATTACTCCGGGTTAAATTTTGCTGATATCTTGGCCTGCCAGGGGTTGTACCAGGAGAAACATGCTCCTCCGTTCACCCCTG
Seq C2 exon
GAATGGAGTTTTCAGGGACTGTAATGGAGACAGGAGAGAACGTCAGTGCTGTGAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004341-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.030 C2=0.250
Domain overlap (PFAM):
C1:
PF082407=ADH_N=PU(1.8=4.0)
A:
PF082407=ADH_N=FE(29.1=100)
C2:
PF082407=ADH_N=FE(17.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTCCCCTTCACTTGCGTT
R:
CCTGTCTCCATTACAGTCCCTGA
Band lengths:
183-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]