Special

MmuEX0007406 @ mm9

Exon Skipping

Gene
ENSMUSG00000033488 | BC026585
Description
cDNA sequence BC026585 [Source:MGI Symbol;Acc:MGI:2448516]
Coordinates
chr1:159388875-159394598:+
Coord C1 exon
chr1:159388875-159388983
Coord A exon
chr1:159392084-159392180
Coord C2 exon
chr1:159394540-159394598
Length
97 bp
Sequences
Splice sites
3' ss Seq
GTGCTGTGTTTCTTCTGCAGGTC
3' ss Score
12.79
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GCAAGCCTGGCAGGGCCAAGGCCGGCACTACCGAGCTGCACTCTGCACCGAGTTGAAGCAGCCCCTGACCATTCAAGAGGTGGCTCCCCGCCCCGTCGGGCCACAGGAG
Seq A exon
GTCAGAGTTGATGTTCATTTCTGTGGTGTTAACTTTGCTGATATTTTGGCCTGTCGTGGTCAGTATCAGGAAAAGCCTCCTCTTCCCTTTACACCGG
Seq C2 exon
GAATGGAGTTTTCTGGGGCTGTCTTAGAGACAGGAACAGATGTCAGCACTGTGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033488-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.027 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF082407=ADH_N=PU(1.6=5.4)

							
A:
PF082407=ADH_N=FE(26.0=100)

							
C2:
PF082407=ADH_N=FE(15.4=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000044945





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000044945f3144A, ENSMUSP00000113664
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr1:178003840-178003936 
ALTERNATIVE
HsaEX0056836
(SEC16B)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr16:60863845-60863941 
HIGH PSI
BtaEX6069972
([1])
Chicken
(galGal4)
chr8:6586732-6586828 
HIGH PSI
GgaEX1000888
([2])
Chicken
(galGal3)
chr8:6915161-6915257 
HIGH PSI
GgaEX1000888
([3])
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CACTACCGAGCTGCACTCTG

				
R: 
CTTTTTCACAGTGCTGACATCTGT

				
Band lengths: 
143-240

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"