GgaEX1000888 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NVJ2]
Coordinates
chr8:6586447-6587736:+
Coord C1 exon
chr8:6586447-6586570
Coord A exon
chr8:6586732-6586828
Coord C2 exon
chr8:6587678-6587736
Length
97 bp
Sequences
Splice sites
3' ss Seq
TTTGTCCCCTTCTCTCGCAGGTC
3' ss Score
12.82
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GCTCTGCATCCTGAGGCTGCCTGCCCAGCCTCGTGCCCGGGGGTACCGAGCAGCACTCTGCACGCAGCTGACACAGCCCCTGCTGGTGCAGGACCTCCCGGCCCCTCGGCTGCAGCCACGCCAG
Seq A exon
GTCCGTGTGCGTGTCCATTACTCCGGGTTAAATTTTGCTGATATCTTGGCCTGCCAGGGGTTGTACCAGGAGAAACATGCTCCTCCGTTCACCCCTG
Seq C2 exon
GAATGGAGTTTTCAGGGACTGTAATGGAGACAGGAGAGAACGTCAGTGCTGTGAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004341_MULTIEX1-1/7=C1-2
Average complexity
S
Mappability confidence:
92%=100=92%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.030 C2=0.250
Domain overlap (PFAM):
C1:
PF082407=ADH_N=PU(1.8=4.8)
A:
PF082407=ADH_N=FE(29.1=100)
C2:
PF082407=ADH_N=FE(17.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCATCCTGAGGCTGC
R:
CACAGCACTGACGTTCTCTCC
Band lengths:
176-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]