BtaINT0009072 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BG97]
Coordinates
chr11:98510471-98511174:+
Coord C1 exon
chr11:98510471-98510587
Coord A exon
chr11:98510588-98510922
Coord C2 exon
chr11:98510923-98511174
Length
335 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCG
5' ss Score
10.05
3' ss Seq
CCCCTTACCTACCCATGCAGGTG
3' ss Score
9.36
Exon sequences
Seq C1 exon
AAAAAGGTGCAGTGCATCAACACGGACAGCCTCTCCCTCCAGATGGGCCTCTACCTCAGCCCACACTTCCTCCAAGCCTCCGACACCATCGAGCTGGGCCAGCAGGGCTTTGTGCAG
Seq A exon
GTACCGGACTTGGACTTGACCGCTCAGGCCTGCCGCCCCCTGTGATTTCTCAGAGCCTTTCTTTCTCCCCAGTGGAACTTGACTTCCTAGGGCTAGGCGGGGGCCAACCTGATGCAGGGTTGTAAGGGTGGGGAGAGCTGAGGCAGAGCTCAGATAGTGGTTGGAATGTCACTTCCTCCTCCTCCTTTGCTCCAGGCAGGCCAGTAACTGTCCTTCCACCATCAAAGTTCCCGAGCAGGAACTCTAGAATGAGTCTAGCCTATTTCGCAAGAATGGGTAAGGTGGAGAGTTATGAGTAACTGACCGCGCCTTGGTCCCCTTACCTACCCATGCAG
Seq C2 exon
GTGAGCGTGTCCCCATCCATCCCTGAGCTCATGATCCAGCTGGAGAGCTGCCAACTGAACCTGGGGCCCGACATGGAAATCGTGGAACTCATCCAGGGCCAGGAAGCCAAGAGCAGCTGCGTGAGCCTGCTGTCCCCGAGCCCTAGTGGTGACATACGCTTCAGCTTCCTCCTCCGCGGCTACATGGTGCCCATGCCCACGACTGGCATCCTCAGCTGCTCTGTGACCATGCATCCCAGGATTCGGTCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046303:ENSBTAT00000011846:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF097654=WD-3=PU(32.2=48.7)
A:
NA
C2:
PF097654=WD-3=PD(64.4=45.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCAACACGGACAGCCTCTC
R:
CGAATCCTGGGATGCATGGTC
Band lengths:
348-683
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development