RnoINT0054945 @ rn6
Intron Retention
Gene
ENSRNOG00000050190 | Eng
Description
endoglin [Source:RGD Symbol;Acc:1593188]
Coordinates
chr3:11713549-11714217:+
Coord C1 exon
chr3:11713549-11713665
Coord A exon
chr3:11713666-11713965
Coord C2 exon
chr3:11713966-11714217
Length
300 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
CCCTCTGCCTGTCTGTGCAGGTG
3' ss Score
12.23
Exon sequences
Seq C1 exon
AAAAAGGTACAGTGCATCGACATGGACAGCCTCTCCTTCCAGCTGGGCCTCTACCTCAGCCCGCACTTCCTCCAGGCATCCAACACCATAGAGCTAGGCCAGCAGGGCTTCGTACAG
Seq A exon
GTACTGAGCACCCCGCTTAACTCCTTGAGTCTTCTGTGGGCCTTTCTTCCCAACATTGCTAGAGAGAGGATCGGATGTCACCTTCCAGAGGATGGAGGAGGCCAGCCTGGTTGTGTGGGACAGACAGAAAAGGAATTGCAAATTGCAATGTCACCCTGTCCTTCCTGTTTGCTCTGAGGGACCCCTTCCTGTCTTTTATTCAGAGGGGTGGGGTCTCCCCTTCTGGCTTACCTCACGAGGCCAGGCCGTCAGTGAAGGGCTAAGGATATCCTATCTCCTCCCCTCTGCCTGTCTGTGCAG
Seq C2 exon
GTGAGCATGTCTCCATTGACCTCTGAGGTCACAGTCCAGCTAGACAGCTGCCATCTGGATTTGGGGCCAGAAGGTGACATGGTGGAACTCATCCAGAGTCGAGCAGCCAAGGGCAGCTGTGTGAGCTTGCTGTCCCCAAGCCCTGAGGGCGACCCACGTTTCAGCTTTCTCCTCCGTGTCTACATGGTGCCCACACCCGCAGCTGGCACCCTCAGTTGCAACTTAGCCCTGCACCCTAGCACCTTGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050190:ENSRNOT00000071801:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(18.5=100)
A:
NA
C2:
PF0010018=Zona_pellucida=FE(40.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACAGTGCATCGACATGGA
R:
GCAGGGCTAAGTTGCAACTGA
Band lengths:
344-644
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]