MmuINT0057432 @ mm10
Intron Retention
Gene
ENSMUSG00000026814 | Eng
Description
endoglin [Source:MGI Symbol;Acc:MGI:95392]
Coordinates
chr2:32678456-32679142:+
Coord C1 exon
chr2:32678456-32678572
Coord A exon
chr2:32678573-32678890
Coord C2 exon
chr2:32678891-32679142
Length
318 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
CCGTCTGTCTGTCTGTGCAGGTG
3' ss Score
11.88
Exon sequences
Seq C1 exon
AAAAAGGTACAGTGCATCGACATGGACAGCCTCTCCTTCCAGCTGGGCCTCTACCTCAGCCCGCACTTCCTCCAGGCATCCAACACCATCGAACTAGGCCAGCAGGCCTTCGTACAG
Seq A exon
GTACTGTGCACCCCACCTAACTATCTCCTTGAGTCTTCTATGGGCCTTTCTTCCCAACGTTGCTAAAGAGAAGATCGGATGCCACCTTCCAGAGGAAGGAGAAGGCCAGCCCGGGTGTGTGTGTGGAAGGCACAGAGAGAAAACGACTTGCACTTTGGAATGTCACTCTGTCCTGCCTGCTTGTTCCTGGAGCCTGTGGGGCTCCTTCTTGTCTTTTATTCAGAGGGGTCCCTTTCTAACTGACGTCAAGAGGGCGAGGGCGTCAGTGAAGAGCCAAGGATACCTGCGTGTATCTCCTCCGTCTGTCTGTCTGTGCAG
Seq C2 exon
GTGAGCGTGTCTCCATTGACCTCTGAGGTCACAGTCCAGCTAGATAGCTGCCATCTGGACTTGGGGCCCGAAGGGGACATGGTGGAACTCATCCAGAGCCGAACAGCCAAGGGCAGCTGTGTGACCTTGCTGTCTCCAAGCCCTGAAGGTGACCCACGCTTCAGCTTCCTCCTCCGGGTCTACATGGTGCCCACACCCACCGCTGGCACCCTCAGTTGCAACTTAGCTCTGCGCCCTAGCACCTTGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026814:ENSMUST00000009705:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=NA C2=0.024
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PD(7.2=15.4),PF0010018=Zona_pellucida=FE(28.6=100)
A:
NA
C2:
PF0010018=Zona_pellucida=FE(62.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACAGTGCATCGACATGGA
R:
GCGCAGAGCTAAGTTGCAACT
Band lengths:
346-664
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types