Special

BtaINT0009075 @ bosTau6

Intron Retention

Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BG97]
Coordinates
chr11:98513290-98513781:+
Coord C1 exon
chr11:98513290-98513391
Coord A exon
chr11:98513392-98513517
Coord C2 exon
chr11:98513518-98513781
Length
126 bp
Sequences
Splice sites
5' ss Seq
CGCGTGAGT
5' ss Score
8.4
3' ss Seq
ACCTCCACCCCTGCCCCCAGGTC
3' ss Score
10.63
Exon sequences
Seq C1 exon
ACAAAGGCCTCGTCCTACCTGCCGTGCTGGGCATCACCTTTGGTGCCTTCCTCATCGGGGCCCTGCTCACCGCCGCGCTCTGGTACATCTACTCGCACACGC
Seq A exon
GTGAGTATCCCAGGCCCCCACAGTGAGTGCTTAGGTCCCCTCCATCACCACCTGGGGGAGCCCAGCGCAGTCTCTGGGGCAGTGGGGACCCCTGGCCGGGGCCCTGACCTCCACCCCTGCCCCCAG
Seq C2 exon
GTCACCCCGGCAAGCGGGAGCCCGTGGTGGCGGTGGCTGCCCCGGCCTCCTCGGAGAGCAGTAGCACCAACCACAGCATCGGGAGCACCCAGAGCACCCCCTGCTCCACCAGCAGCATGGCGTAGTGCCCAGCCAGCCCTCGCCCAGCGGGAGAGACTGAGCAGCCACCAGCTGGGAACCACTGGCCGTGGACTTATCCCGGGACCCCAGCCCCTCCACTTGACCAAGGATGAACCCTGCCCTCTGCACCCGCCCCTGCTGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046303:ENSBTAT00000011846:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact

Alternative protein isoforms

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.683
Domain overlap (PFAM):

C1:
PF138581=DUF4199=PU(48.4=88.6)
A:
NA
C2:
PF138581=DUF4199=PD(50.0=76.2)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACATCTACTCGCACACGC
R:
ATCCTTGGTCAAGTGGAGGGG
Band lengths:
252-378
Functional annotations
There are 1 annotated functions for this event
PMID: 15806144
RT-PCR analysis showed that L is the predominant endoglin isoform expressed in mouse tissues, although S-endoglin mRNA is significantly expressed in liver and lung, as well as in endothelial cell lines. L- and S-endoglin isoforms can form disulfide-linked heterodimers, as demonstrated by cotransfection of L- and S-endoglin constructs. To address the role of S-endoglin in vivo, an S-Eng(+) transgenic mouse model that targets S-endoglin expression to the endothelium was generated. The lethal phenotype of endoglin-null (Eng(-/-)) mice was not rescued by breeding S-Eng(+) transgenic mice into the endoglin-null background. S-Eng(+) mice exhibited reduced tumor growth and neovascularization after transplantation of Lewis lung carcinoma cells. In addition, S-Eng(+) mice showed a drastic inhibition of benign papilloma formation when subjected to two-stage chemical skin carcinogenesis. These results point to S-endoglin as an antiangiogenic molecule, in contrast to L-endoglin which is proangiogenic.


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development