GgaINT1012299 @ galGal4
Intron Retention
Gene
ENSGALG00000005060 | ENG
Description
endoglin precursor [Source:RefSeq peptide;Acc:NP_001074356]
Coordinates
chr17:4891001-4891674:+
Coord C1 exon
chr17:4891001-4891102
Coord A exon
chr17:4891103-4891555
Coord C2 exon
chr17:4891556-4891674
Length
453 bp
Sequences
Splice sites
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
3' ss Seq
GGACCGGCGGCGTAATGCAGGTC
3' ss Score
0.38
Exon sequences
Seq C1 exon
ACCAAGGGCTGGGGCTGTCCGCCGTGCTGGGCATCACCTTTGGAGCCTTCCTCATCGGCGCACTCCTCACTGCTGGGCTCTGGTATATCTACTCGCATACCC
Seq A exon
GTGAGTATCTCTGGGGGAAAGCTGGGGGGGCCCACACACACGTCCCATTGCTGGGAAAGCCATCCTCCTCCCCACTCCCACCCGTCCCGCACGTCCCCGGGAGGGGGGCTGTCATGTTGCTATCACCCAGACATCCCTTTTGGCCGAGGCATCTCGTGAGAGCGAGCCAGCCATGGTCCCCAAGGTCCCCACAAAGCCCATCACCATCCCTCATCTTATCAGGGCCGGGGGGGCAGGGAGGGGGTGCAGAGCCGTGTTGGCCGGGGAGCATGAGCCCTGCGCCAGGGACGGGTCCCTTATCAGGGCTGGAAAGGTCACGTCCAGGATGAGCCATCCCCTGCCGGCCCTGCCGGCGCCGAGTTTTGTTTTTTGGCCCCTACACTTACTTTTTTCTTTTCCCCCCCCTCCCCCCCCTCCTTCCCACCCCCTCCCTGGACCGGCGGCGTAATGCAG
Seq C2 exon
GTCCCATCTCCAAACTGCAGCCGGTTTCCACCACAGCACCAGCCTCGGAGAGCAGCAGCACCAACCACAGCATTGGCAGCACCCAGAGCACCCCCTGCTCCACCAGCAGCATGGCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005060:ENSGALT00000039898:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.744
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGGCTGGGGCTGTCC
R:
GCCATGCTGCTGGTGGAG
Band lengths:
215-668
Functional annotations
There are 1 annotated functions for this event
PMID: 15806144
RT-PCR analysis showed that L is the predominant endoglin isoform expressed in mouse tissues, although S-endoglin mRNA is significantly expressed in liver and lung, as well as in endothelial cell lines. L- and S-endoglin isoforms can form disulfide-linked heterodimers, as demonstrated by cotransfection of L- and S-endoglin constructs. To address the role of S-endoglin in vivo, an S-Eng(+) transgenic mouse model that targets S-endoglin expression to the endothelium was generated. The lethal phenotype of endoglin-null (Eng(-/-)) mice was not rescued by breeding S-Eng(+) transgenic mice into the endoglin-null background. S-Eng(+) mice exhibited reduced tumor growth and neovascularization after transplantation of Lewis lung carcinoma cells. In addition, S-Eng(+) mice showed a drastic inhibition of benign papilloma formation when subjected to two-stage chemical skin carcinogenesis. These results point to S-endoglin as an antiangiogenic molecule, in contrast to L-endoglin which is proangiogenic.
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]