Special

RnoINT0054948 @ rn6

Intron Retention

Description
endoglin [Source:RGD Symbol;Acc:1593188]
Coordinates
chr3:11716464-11717485:+
Coord C1 exon
chr3:11716464-11716565
Coord A exon
chr3:11716566-11716712
Coord C2 exon
chr3:11716713-11717485
Length
147 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
CCCCTGCCCACACCTCTCAGGTG
3' ss Score
8.68
Exon sequences
Seq C1 exon
GCAAAGGCCTCGTCCTGCCCTCTGTACTGGGCATCACCTTTGGTGCCTTCCTCATTGGGGCCCTGCTCACAGCTGCACTCTGGTACATCTATTCTCACACAC
Seq A exon
GTGAGTATCCCAAGCCTCTCCACCCCCTTCCTACAGTGAGTGCTCAGGGCCGGTCCACACCACCCCAGGGCACACCCTGGGAAGCCTCTGAGGAAGTGGGGAGTCCTGGCTGGGGCCCTGACCTCCACCCCTGCCCACACCTCTCAG
Seq C2 exon
GTGCCCCTAGCAAGCGGGAGCCCGTGGTGGCAGTGGCTGCCCCGGCCTCCTCTGAGAGCAGCAGTACCAACCACAGCATCGGGAGCACCCAGAGCACCCCCTGCTCCACCAGCAGCATGGCATAGTACCCAGCCTGGAGCCTTGGGGAGCCCCCCAGCCAGCCCTTGCCCTGCAGGAGAGGCGGAGCAGCCACAAGCTGGGAACCATCGGCCATGAACTTGTCCCCTCAGCCAAGGATGGAGCGTCCTCCTGTACCTGCTCCTCATGCCTCCCCCGCAGAGGCTTGTTGCCAGTAGAGACTCCAACTTGGAACACCTTGGGATCTCCTCACCCCACTTTACCTGCCCAACCCAGGGGCCCTGGGATATGGCTGCCTGGGACTACAGAAAGACACCGCACTGCTGTGAACATCCGTGCTGCTGTGGAACCCTAATCCCCTGCCTTCAAGCTGGATCCTGTGCTGATGAACTGGGCAGGGTGGGAGGCTAGGACTCAAGACACGCGCCTGGCCTAGCCCAGAGCCACCTGCATCTGGCTGGCCCCAGGAGCCTCCTCACCTTGACTAGCACAATTTTGGTCGGGGAAACAGAGGCTGAGGGGTGCTCAGCTCATTGGCCTAGAAGATGGCAAGAAGGGTGGGTTGGGGGAGCCCAGCCCCTCCCCAGAGATCTCCTCCCAGCCCATCCATTGAGCTGGCAGCAGGAGGGTAGTGGCCAGGTGGCTGGTCCTGGGCCAAGCCCATATATTTACCAATAAATCAGACATGAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050190:ENSRNOT00000071801:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact

Alternative protein isoforms

No structure available
Features
Disorder rate (Iupred):
  C1=0.358 A=NA C2=0.648
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACAGCTGCACTCTGGTAC
R:
AAGTTCATGGCCGATGGTTCC
Band lengths:
257-404
Functional annotations
There are 1 annotated functions for this event
PMID: 15806144
RT-PCR analysis showed that L is the predominant endoglin isoform expressed in mouse tissues, although S-endoglin mRNA is significantly expressed in liver and lung, as well as in endothelial cell lines. L- and S-endoglin isoforms can form disulfide-linked heterodimers, as demonstrated by cotransfection of L- and S-endoglin constructs. To address the role of S-endoglin in vivo, an S-Eng(+) transgenic mouse model that targets S-endoglin expression to the endothelium was generated. The lethal phenotype of endoglin-null (Eng(-/-)) mice was not rescued by breeding S-Eng(+) transgenic mice into the endoglin-null background. S-Eng(+) mice exhibited reduced tumor growth and neovascularization after transplantation of Lewis lung carcinoma cells. In addition, S-Eng(+) mice showed a drastic inhibition of benign papilloma formation when subjected to two-stage chemical skin carcinogenesis. These results point to S-endoglin as an antiangiogenic molecule, in contrast to L-endoglin which is proangiogenic.


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]