BtaINT0009089 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MX70]
Coordinates
chr5:100931191-100938555:-
Coord C1 exon
chr5:100938414-100938555
Coord A exon
chr5:100931320-100938413
Coord C2 exon
chr5:100931191-100931319
Length
7094 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
TATGACATTTGTATTTACAGGCA
3' ss Score
8.21
Exon sequences
Seq C1 exon
ACATTTCCTGCTTTGCAACGACTGAGAAAAGGTACCACCAAATCCTTTTTTTCAAACAGAAACATGACATCAACAGAGGTGTTTTTGAAAATCTTAGAGACAGACCCTACCTATAGAGAGAACACAGAGGCGTGGAGATCTG
Seq A exon
GTAAGGTTAAATTGATGAACTTTGACAAAACAAAACGGGAGTTGGGGAGGAGAGTTCTTATACTACTGATCACTGACAGCATAGTAGAAATTGTGCTTTAGAGGTATCAGTACTTCACAGTTAACCTCCATAGAAGGAGAGATGTTTTGAGGGACTAGAAGTGGGTGAGAGGGCAGGTGTGTAATTGTTATGTTAGTTATTCTGCTACTGGATATGTTACTTAAATATTACTGCACAGTGAATTATGTTATAGGAGGTTAAGAGAAAAATGGTCTGTGGGTTTTGTTTTTAATTAGTCTTCGTATTTTCTCCAGGTTGCTGGCTACTTGCATTCTGGCAACTCACATTATGATGTTAAATAACAGATGATTATATCCCAGAGGGATGGCAAACAGACACCAACAATTTTGTAATACATAAACTAATAAAAGTTACCCATACCTCCTATATAGCACAGGGAACTCTGCTCAATATTATGTAACAACCTAAGTGGGAAAAGAATTTGAAAAAGAATAAACACATGTATATGTTAAAAAAAATTAACCATGACACTTATGCTGTAGTCTGTTTGAAACTAATAATAATATATTTGGAATCTGTTATTTGTTAGACACAGAGCTACAAAGACAAATTGTATTTAGACCCTGCCTGCAGGGCTTCATCATCTCAGGGACAGACAAATGAGTTACTACAATTTGATGCGATTTGTACTACAAGGTATTTAATAAAACCTAGAGAATTGGTGATGGCTTTACTTGTGAAGTGACTTTTGATCTGGGCTTTGAATGAGTAGTCACATTTTCTGGAAGAAATATGAGTACAAGTCAAAATTTTGTGTTCCAAAAAAATCTAAATAAATATAAAAGTATATTTTCTTACCCTTGGGGATAAAACTGTCCTGAAAAATTTTCTTTTGGAATTAAGGGTAAATGTGATTTTCAGTGATATCGTTAAGTGTTTCAGATGAAATCTATTGAGGCTCATTTATATGTTCAAATGACTTTCCCTTTGTCTTTCCCTCTGGCTTTCTCCAGCTTTTCCAAGTGGTTCAGTGGGTAAAGAATCTGCCTGCAATTCAGGAGATGCAAGTTTGATCAGTGGGTGGGGAAGATCCTCTGGAGGAGGGCATGGCAACCCACCCCAGTATTCTTGCCTGGAGAATCCCATGGACAGTGGAGCCTGGCGGTCTATAGACCATGGGGTCACAAAGAGTCAGACCTGACTGAAGTGACTGAGCATTCATACACTGTTTCTCTCTTGCTTTATGTCTCTCTCTGTCTCATGGGATCTGGTGTACTTCTGTGTTCTCTCTCTCTCTCTCTTTTTTTTTCATTCTCTGGACTTTTGATTATAGCACATCTTCAGCTAAGCTTTATATCATCCTACTTAGAATACATTACCAAAGTAGTTTATATAATGTGTCTTACCAGAAATTTTCAGAAGTGATCATAAAAATGAAATGAGCATCTTTTAAACATAACCATTTTAGTTAAATTAAGGGATTTCCTGGTGGCTCAGATAGTATAGAGTCTGCCTGCATGCGGGAAACCTAAGTGTGATCCCTGGGTCAGGAAGATTCCCTGGAGAAGGAAATGGCAACCCACTCCAGTATTCTTGTCTGGAAAATCCCCTGGAAGAGGACACCAGTCTTTTCTGTTTATTGGAGTCTAAAGGCAAGAATACTAGAGTGGGTTGCCATGTCCTCCTCCAGGGGATCTTCTGGACCCAGGGATCAAACCCGTGTCTCTAATGTCTCCTGCATTGGCAGGTGGGTTCTTTACTACTACTGCAAATTGGGAGCTGAGAATTAATTTATTGTTCTCTAAAGAGACTTTGATAAAATCATGAGTAATTATTGATTTTTAAAAAGTCACCTGCAAAAACTGAGACTATTGGTGTATAGATCCTTTGTAATTTATTTATTTCTATGTTTAAAAATTTTAATCTTTGATAATTTAAAAGCAGATGTAGAGTTTGAAAGTAGGAATTGGACCTAAATCTATCCACCAGCAAATTCTTTAGCATTTTTAGTTTATATTAAATTTGATGATAAAGAGAAAGAACATAGCTTATGCATGTTTGTTCTTCAGTCCAGTAGAAAGAACACTTTTTATAGCTTTTACTGAACTTCTATTTTCTGCTAAAAATTTGCATTTCCTTCTTTCTTCTCCCATTCTCCCCTCTCCCTGAACTTTACTTTTTATCTGGGACAATCGGATATTGAGGTTCCTGAAACACAGGGCTCGTGCTTAATGCTTAATGCTTAATGAAAGCAAAAGTTCTTGCCAAATGTTGATGTTTTACTACCTAAGCCACGTAGGCAAAACTACTTGAGCAGCACAAAGGTGAAATCTATTTTCTTTTAAATTTAAACTGTCCTTGTAAGTTAAATAAGTTTTCTAGGACATGAAAGTAAAAGTTAAAACCAGTAGACCAGTAATTATGCTCCAATTAATATAAATAAATAAATTTAAAAAGCAAGCATCATTCAGTTCAGTTCAGTCACTCAGTCATGTCCGACTCTTTGTGACCCCATGAATCATAGCATGTCAGGCCTCCTTGTCCATCACCTACTCCTGGAGTTCACTCAGACTCATGTGCATCGAGTCGGTGATGGCATCCAGCCATCTCATCCTGTCATCCCCTTCTCCTCCTGCCCCCAGTCCCTCCCAGCATCAGGGTGTTTTCCAATGAGTCAGCTCTTCGTATGAGGTGGTCAATGTATTGGAGTTTAAGCTGTAGCATCAGTCCTTCCAATGAACACCAAGGACTGGTCTCCTTTAGGATGGACTGGTTGGATCTCATATATTAATGCATCTATATGGAATCTAGAAAAATGGTACTGATGAACGTATTTGCAGGGCAGGAATGGAGACACAAGGGAAGGCGAGTAGGACAAACAGAGAGTAGCATGGACATATATACACTACCATCTGCAAAATGGATAGCTAGTGGGAAGCAAATTGAATATTCAAATTAGCTTATCTAAAACTCACATATTAGAGTTTAAAAAGGATCCATTTACCCACTTCCAGCTCTTCTCTGAGAATGTAAAATTTAATCCAATCCCAAACAGAATTCCTTCTTTGTTTATCAGGTTTTGTATGAGTCTCTGTAAATGAAACAGAAGAAATGACTGAATATTGAATCTGTCTATCTGTTGCTGGTTTGCATTCTTATGTTCATCCTCTGAAACCCAGTTCAAGTATCACCTCTTCTAAGAGGCTTTTCCTGACTCCCTGTTGGAGTTAATTAATCCTTATTTGTGATATTTCTATTTGTTCATTTATATATTACTATATACAAATGTTTATATTTATATTGTTGTATTCATTAAATTATATTTATCTTGTTTACATGTCTATTTAGTCTCTCAGATTGTGAGCTTCTTGAAGTCAAGGTTGATATTTTCATCTGCATAGAACCCTTAAGGCTAAAGCACAAAGATCTTGATGTGGCTAGAAGTCAGTGCTAAGTTGTATTAAAGTATTTTACTTAATTATTTACCAGTTCTTCCCCATCTTGAATAAGCAGTGGACTGGATTCTCTTGTGGAACAGTCAGCTGGACTGTCATTCCAAGATTTGGAAGATTCATGAAAATACAAGCATTTATCTCGGATTTGTTGCCAGTGCATTGGGCACGTTAACAGAACTGGTCTCTCTAAAGTAAGAAAGAAGGGGAACAATAAAGTAAGAAAGAGGAAGAAGAAATAAATGTTATGTTTCTAACCTGTCCCCACCCCACTAACACTAACCACGCATGCACTAGTCATCAAAAATTCAGGAAAGACTTTGATCATCGCTGTGAGGACAATTATGTATTTAGAATTTAATATAACTGTGACGCTTTTGAGACCATTGTTCATTCTGCTACTAAGATTTGAAAAATGGTGACCAGTTAAAACACTAACAGACAGAATAACTTGTTCAAGTCCACACACGCAGATGGTGATAGAGACAAAACTCTTTCTAGGGTTCCTTAAATTCCTCACCAGTGCTCTTTCTACTCCATGGACAACAATATCAAAATCATCTAAAAAATACACGAAACAATATACTTGAAAGCAAATAATAATTCATAAGTTAATGGCAAATACCATGGAGAAAAATTATAAAAACACTCTAATGCTAAATTATATATTTGCCTATTCAGTTCAGTTCAACTCAGTTACTCAGTCTTGTCCGATTCTGTGAACCCATGGATTGCAGCATGGGGCTTCCTTGTCCATCACCAACTCCCAGAGCTTGCTCAAACTCATGTCCATCGAGTTGGTGATGCCATCCAACCATCTCAACCTCTGTCATCCCCTTCTACCTTCTTCCTTCAGTCTTTCCCAGCATCAGGGTCTTACTTTGGTCAGGGCTCTGTGATGATCTAGAGGGGTGGGATGGGAGGGTGGGAGGAGGCTCAAGAGGGAGGGGATATATGTATACTTATAGCTGATTCATGCTGTTGTATAGCAGAAACCAGCACAACACTGTAAAACAACTATCCTTCAATTAAAAATAAATTAAAAAAATAATAGTCATCCTTTTGGTATACACTTTTAGTTTTGACAAATACATATAGTTGTGTAGTCACATCACGATCATTATAAAGAACAGTTCCGCCCGCACCCACACCTTTGTAAACATTGCTTTCCTCTCTGTCCACCCTTTGATAAAAACTGATCTGTTATCTTTTCTTATACTCTTGCTTTAGAAGAATGTTGATGGAGTCTGACTTTTTTAACTAAGCATCGTGCATTTGAAATTCATCCATATTGTACTGTGTTATCAATAGTGTAGTTTTAAGAAGGAGAGATATTATTTACAAGGACTCCTGCAATAGGAAAAATGCTCTAAAAAAGGTCCTCATTTTATAAATAGGTCAAGAAGTGGGTTGGACACTTGTGGGGGAAGAGAGCATGAACTGTAAAGAGTAGATGATAGCCTGAAGTTAGCACTTCCCACTTTGTGCCAGGGACACGAACTCATGGTCACACATGAGCTATGATGCATCTCACTTCTCTTTTTAGAGCTTGTTTACATTTTCAGGCAAGCCAGAGTTTGGGGATTTGGATGGGAGAGTGAGCCTCACTAAAATTTAACAAGCCAAAGAAAAATAAGAAATGAGCAATTGTGAATATAAAGTCAAGTTTTTCTTTTCTCCTAGTACCAAGTGGTATTTATTTATCTTTCTATCAGCTGAAGGATATTTGAATTGTTGCCAGTTTTGGTGATGATGAATAAAAAGGTAAAGCGAAAGCCACTCAGTTGTGTCTGACTCTTTGTGAGCCCATGGACTATACAGTCCATTGAATTCTGCAGGCCAGAATACTGGAGTCAGTAGTCTTTCCGTTCTCCAGGGGATCTTTCCAAGCCAGGGGTCGAACCCAGGTCTCCTGCATTTACAGGTGGATTCTTTACCAGCTGAACCACGAGGGAAGCCCGATAATGAATAAAGTTAATATAAATATTCAAGTCTAGGTTTTTGTGTAAATGGAAGTTTTCATTCCTCTTGCATAGACACCAAGGGATTCTTACATTGCTAGGGCATATGGTAAGGGTATGTTCACCACACCTAACTGCCAAGCTGTTTTCCAAAGTGGCTATACAGTTATATTTCCAACAGTTCATGAGAATTCCATTTGCATCTTTTCTTCCCTATCACCTAGTTTTGTTATTTTGTTTTACTTGCCACTCTGATGCACATATTGTGGCAGCTCACTGTATTTTACTGTTTCCCTAATGACTAGTTATGTTGGTTTCTTGATTGGTGGCAGCCAACAGGGAAGTCATAGGAGCTGCCTAGGGCTGCTAGATTCAGCAGTCACTGGGGTGAAAGGAGGCCTTAGTTCCCAGAAGCCTGCTGGGAACCTGGTGTCACAGGAGTCACTTGGGTCACTGGAGCTGGCAGGCACCTGGGAGAGGGGGGCCTTGGTTTGTGAGTCTGCAGGGAGTCACACAGGGCTGCAGGAGCCAGAAGGATGGGGAAGGCAGATCTGGGATGTGTAGTGAAGTCAGGTGCTGTTTTACTCCCCTTTTCCCATGGGGAATGGGTCTCTCTCTCTGCTGGACTGCCCAGTCCTGAGGGAAGGGTTTTGGGGGCCTGGTCCCCAAGAGTTCACCAGGAGCCAAGTGTCACAGGAGCCCCACCTGGAGCAGCTGGAGTTGGCAGGTGCAGGGGGGAGACAGGAGCCTGGGCTCCTAGATGCCCACAGGAAGCCCTGGGTGGAAGCTGTCTAAGGCTGCATTATCTGCCTGGAATTGCTAGAGTACACAGGAGCTGGGATGAAGCAGGGGGTGGGTGTACCTGGTGCTCCTTGCTCTGGGGAAGGTATTTTTAATGTGCAGATACTTTTCAAATTGATATTTCTACTGGGAGGAGAGTGGATGTGACTTCGAGAAACATTTTCACTTCTTTCTCATCTCTTTGCCTTTTTAACTTTTGCCTTATTTACTTTTCTTACCTTATTGGCACTCACAGAAACTCCAGTAAAATGTTAAATTAGATTGGTGAGAGCAGACATCCCTGCCTTGTTCCTGACCTTTGGAGGAAGGCCTTCACTTTTTCACCATTAAGTATCATGTTAGCTGCCCTATTTCTATGAAAAGTGAAAGTTCAGTTCATAATTTGTTGGGCTTTTTTATTTTGGATGACATACGTTTTTCCATATTTTATGTCATACTTATTGACATGGTCATATCCATTTCTCTTCTCTTATTCTGTTAATATGATGAATTATAGTGATTAATTTTCTAATGCTCTTCTCAGAACTTCTAACCAAATTTATTATTTATGGAGGTAAATCTGGATTGTTTGTATGTTTTGTTTTCATTCTGATTTCTACTCTTTTCGTTTCTTACTCTCTTATTAGCTCTTCTTCCAATAACTGGAAGACTCTCCAGGGGAAAAAGCTTCAGTTTCTCTTCTCTCTAGTCGCTTTGGGGCCATGTCCATGGCTGTCTGTCCTGGACATGGACCTTTTGTGAGAGAGTTTGGCAATAGGGGAGGTGAGGTACAGCAGACTTTACGTGTTGATTCTGTGATAAATTTGTTTTTCTTTCTAATACCTCCATGAGATTGAGATTATGACATTTGTATTTACAG
Seq C2 exon
GCAAAGGTCTCCAAAAGAAATGCCTAGCAATTACCTCTTCTGTTACACCTGCCACGCTTTGCTGCTGCATCCTGATTATTCTTATACTTGTAGCTCTAAATGTGGTGACACTTTCCGTTCTTCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046324:ENSBTAT00000063840:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]