MmuINT1007266 @ mm10
Intron Retention
Gene
ENSMUSG00000000248 | Clec2g
Description
C-type lectin domain family 2, member g [Source:MGI Symbol;Acc:MGI:1918059]
Coordinates
chr6:128979396-128980309:+
Coord C1 exon
chr6:128979396-128979478
Coord A exon
chr6:128979479-128980183
Coord C2 exon
chr6:128980184-128980309
Length
705 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGC
5' ss Score
4.33
3' ss Seq
CTTATATTCATATTTTACAGATA
3' ss Score
9.44
Exon sequences
Seq C1 exon
GTTTGTGTATCACATGAATGCTCAGTGCCTAAAGAAGCCAGAAGAAGGCGAAAGCTCCCCCGGAACTGGAGGTGTACATTCTT
Seq A exon
GTAAGCTACCTTCAATTCAAGTCCTCTGGAAGAGCTGAAAGAGATCTTAACAGCTGAGCCATTCTCCAGACACCTGACCCTATTTCTTTGTCCTGGCGAGGACCTCCTGGGAAAAGTCTACCTGGAGTAATGAGCAGACATCTGACTCTTGCTCCTGATTGCTGGGAACACATTCATAATGGCACCATTGAGAGTGCAGCTGACTGAAGTTGGACTTACTGTTTTGTTTTTAGTGGATGACTTTTGTAGGGTTGAAGAAGTTCCTTTAGCTTCCATTTTCCACATAATTTTGCTGTTTATTGAGATATTTCTAGTTTTTCCTCTTTTCTTATTTTGTTATTATGTCTAATTACATCAACTTATTTTCTAGTGTTTCCATAACTCCTTCTAGCCAGAGCGCTTTTTATGGAGCCATATCCAGATTTTTGTTGTTTGCATTTCACTGGGATCCCCACTCCCTCCATTTTTGCTCTTCCATTATTCACCCTGAGTTCAGTGACCAGAAGGCTCCCTGGCAGAAGTTCTGTTTCCATCCTCTCTATACTTCTTTCTACCATGGACATCCTTTGTGGACCAGGGCCTTCTCTAAAAGGGTTGGCAGAAGCCTTTCAGGAACTGATAGGCAATTGTCAAGTGGGTTTTGTGGTTATTTTATTTTATTTAAGAAATTCTTGAAATTCGCATTCTTATATTCATATTTTACAG
Seq C2 exon
ATAAAATTCTCCAAAGAAATAGTCTCAGAGCCATCTCCCCTGAGTCTTCTGCTAAGCTTTACTGCTGCTGTGGAGTGATCATGGTCCTCACTGTAGCTGTAGTTGCTCTTTCTGTTGCTTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000248:ENSMUST00000000254:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(26.7=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(21.0=51.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTATCACATGAATGCTCAGTG
R:
CTGGCAAAGCAACAGAAAGAGC
Band lengths:
206-911
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types