HsaINT0094195 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr12:9800643-9806404:+
Coord C1 exon
chr12:9800643-9801529
Coord A exon
chr12:9801530-9806278
Coord C2 exon
chr12:9806279-9806404
Length
4749 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATG
5' ss Score
5.99
3' ss Seq
CTGATGTTTCTATTTTACAGATA
3' ss Score
10.42
Exon sequences
Seq C1 exon
AGTGCTGGGCGCAGCCGCGCCTCGCGCCTCCCGCCCCCCGGGGCTGCGGCGGGGACGCTTCTCTGGAGGGTGTGGCGGAAACTTGAGGCTTGGAGTCCGCGGGACCGGAAGGGGCTCCGTAGCTCGGGGCAGGGTGGGCGCGAGAGAGCCTAGAAGCCCATGTAGCCGCGAATCCCGCAGCCCCAGTACACCTCCCTCCGTGCCTCCCCGCCTTTTCTGCAGAGCTCCGCCCTGGAGTGAAGGAGGAGCCGTCACCTGGAGCTCCGAAAAAAGCAGAAGAAGGCGCTTTTTATTTAGCCAGTGTGACCCCGCCAGGGCCTTCTCGGTTGGGTGAGCACTCTCTCTGACCAGGCCATGAAAAGAAAAATCTGTGCGATGCCTCCCCACATGTCACGGGACTCTGACTTGCCTTTGTCGTCAGAGTTTGCAGAACTTTGGGGGACCTGAGAGGGGAGTGCCCCCTGGACGGGCCACGGCTGTCTGTGGCTTAAGGGCTTTTGGAAGGGCGGAGAGAGGGAAACGGCGTCCTAGTGGCCTGCTTCAGGGCCACCCACGGGCCCTCCCCCAACCTCTCTCTGATCCAACTTGTTTTTCCAGCCTAGTTGGAAACTTGTGGATGCTGTGACCTCAAGAAGACTTGGCATTTTATTTGGAAGATAGACATCTATTTGCAACTGTCCTGAGCCCCTATTTTCCTCCCACCTTTCTTGGGGAAACTTGTTTTTAAGGGATGCCACTGTTTTTGTAACATGTTGCTCCTAGCTCTTAGCATTCATGGTACTGTTGTAACCGTCCAGTGGGTTCACTTTGTCTGCTAGATAGAGCCGATTTATCAAGACGGGGATTACAATGGAGAAAGAGTAATTCACGCAGAGCCGGCTTTGCAG
Seq A exon
GTGATGGGAGTTTTATTATTACTCAAATCGGTCTTCTTAAATTTGTGTCCCGGAGCAGTACGTTCTAACATTTTTTAGATGTTACAAATGTAACTTTTGGCTAAGTTACATTCCTACTAAGTTATATTCTTACTAACTAAGCCAAATGTTATATTCTAAAGAATGTTTACAGAACCGAAACTAAATATTTGTTACCTGGTACAGTTGTGAAACTTGTTTTTTAAAATGCATCCTGTGATTTAAGTTTTTCAGATCCTGAAACTGAGTTAAAATTTGATCAGTAATAATGCTTTATTTCTCTGTTCTTCTGAGAGATAATTCCTAATGTTGTTTTTCCAACTAGAAGTCTGAAGAGTTATTGTGTTCAGTGTGTACCTTAAGAGTGGTATGAATTTGCGGGAGTCAGGACACACTGTAAGAAAGGTAGAAGAGAAATAAGTGAGCAAGAGAGAAGTGGAACAAGATGCATGTGGGAATATTGCTGCAGGACTTTTCCTTATTTCAGCTAAAAATGGGATTCTTTGTCCCACGGCCACGGAAATTCAGGCTCGCAGATGGTTTAAAGGGTGTGTGAAGCAGAGTTTTATTGGGTGAAAAAGGGAAAAAAAGGGGGAAACAGGTACTCTTGCAGGGCCAGAGTCCTTCCGCCGGAGCGCTTCCCACCTGACAGTTTGAATCCCAGGTTCTACAAATGAAAAACTGGGGCCAGGCTCAGGCTTCTCTCTGCTGCAAACCTTGTGAACTTCCCAAGGCTCCACCTCAGTGGGCAGGCTAATTGGAGTTTCTCCAGGGACCCCTTCCCACCTGGCTGTCTCAGTATTAGTAGGAGGGGCTAGAGATGTAAAAAAGAAGAAGAGAAAGCAGGCACATTTAGAAGATTATTAAGAGAGGCAAATGGGAGATTTGGGGGAAGTTTTAAGGGGAGAGTTACACATTACCCTAGTAGCAATGAAAAAGAATTACGGAAGTCTTAGTATTCTGAACCTTTAAGACAATTTTGCGTTAGTGTAGAACCAGAAAGAATAAAGGTTGATATTTTTATATGAGCCAAAATCCAAACGATATTTACTGCTTAAGATCATCCAATCTTACCCATCTTTCCCCCTGTCTAGAATTTAAGCTGAAGCTCCCTGTTATTCTTGTAGATGTATATTAAACGGACGAAAGTTGGCAGGGACTTTTAAAGTATTATAATTTATATTCAGTAAAATTCACTCTTTTGGTGTAGATTTCTATGGTAAACATATATACTCATGTTACTACCATAAAAGTCAAGATATAGAGCCATACCCACCCACTCGAAATTCCCTCATGTCCCTTTGTAGAATGTCTCTTCCTCTACCGCTAGCCCTTGGCAACCACTCATCTGTTTTCTGATCTTGCACTTTTGCTTTTCCAGAATGTCACATCGATGGAATCTTGCAGTAGGTAAATGTAGAATCTGACTTCATTCACTTAGCAATAATGCATTTTCAAGTCATCTGTATTATAGTATGTATCATTTGTCAAAGAAAAACAAGTCTGGACTTAGGGAGAAACTTTATTCAAAAGGACTGTTGCAATAGGAATAACACTGATTTCAAAAATATGTTAGGCCAGGTGCGGTGGCTTATGCCTATAATCCCAGCAATTTGGGAGGCTGAGGCGGGTGGATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAACCTGCTGAAACCCCGTCTCTACTAAACAAAATACAAAAAATTAGCCGGGCATGGTGGTGGGCATCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGGTGGAAGCTTACAGTGGGCCGAGATCATGCTCCTGCACTCCAGCGTGGGCGACAGAGACTCTGTCTTAAAAAAAAAAAAAAAGTTAGTGGTGTGGGAGAGAGCAGGCAAAGTCTAGGCGTTTCAGCAGGAAATGGTGCAATGTGGTCTGTGGTCAGGTTAAGGCAGGATGTTTTTTGCAAGTCTGTGCTTTGAGGCATTTAGGCAAACTTGCGGGCAAACACGTGTAGGGCCTGTGGGGAGGAGAAAAACCTGACAAAAGTTTGGCCAGCTAACACACAGTAAGAAATTGACAATTGTGAATGTGTGATCGAGTTTTTTCTTTTATTAGGGCTGAGGAATAGTTGTTTACCTCTTCAGCAGCTGAAGCATATTTGAGTTGTTGCTAGTTTTTTGTGATAATGAATAAACCTGGTGTAAAATATTCCTTACAGGTTTTTGGGTAAACACAAGTTTTCACTTCCCTTGTTTAAATACCTAGGGATAGGATGGCTAGGGCATGTGGTGAATTTACATTTACCATAACAAACTGCTTAACTGTTTTCCAAAATGCCCATAACATTTTGCATTTCCAGTGATGATGCATGAAAATTCCAGTTGCATCCTGTCCATTCTCTCACTGCTATAAAGAAATAGCCTGAGACTGAGTAATTTGTAAAGAAAAGAGGTTTAATTGGCTGACCATTCCACAGGCTGGCCAGGAAGCATGATTCTGGCATCTGCTCAGCTTCTGGGGATGCCTCAGGAAACTTACAATTCATGGCAGAAGGCAAAGGGGGAGTCCATACTTCACTTGGCCAGAGCAGGAGGAAGAGAGGAAGTGAGGGAGGGCACCACACAGTTTTCAACCGCCAGATCTCACGAGAACTCACTCTTATCATGACACAGTGCCAAGGGGGAAATCTGCCCCCATGATCCAATCTCCTTCCACCAGACCCCACCTCCAACGCTGGAGATTACAATTCAACATAAGATTTGGGTGGGGACAAAGATCCAAACCATATCACATCCCTTCCTCACCAGCAGTTGTTTCTTTTTCTGTTTTGTTTGCCACTCTAATAACCATGTAGTAGTCACTCATGGTTTTAATTTGTATTTCTCAAATGGCTGGTTATTTCAAGCATGTTTTTATGCACTTGTTTGCTATTCATATATCCTCTTTAATCAAGTATATCTCCAAATCATTGGCCCACTTTTTAATCTAGTTTTCGTTTTCTTATTGTTGAGTTTTGAGTTCTTAATATATTCTAGATACAAGTCGCTTTTTAGAGAGATGTTTTTCTGCCTTTGCTTGTCTTTTTATTCCCTTTTCAGGGTTTTTTTTCTAGCAGAGAGTTTTAATTACGTTAAAGTTCAATTTATCAATTTTTAAAATATTGATAATGCTTTTGGTGTTGTATGTAAGAAATTTTTGCCTAATTCAAGTTCACAAAAATGTAATTTTCCTCTTCTAATAGTTTTAGGGTTTGAGGCTTTATATATGAGTCTAAAATTTATTTTGAGTTAATTTTCTTATAAGGTATTAGGTGTGAGCTGAGGTTCACTGTTTTGCATTAGGACACTCAATTGTTCCAGCACTACATGTTCAGAAAATATTACCCCTTACCTACCTGATTACTTTCCACGTCTGTCAAATGTCAATTGATGATACACGTTTAGATTTGTTTCTGAAACCTTTTTTCTGTTCCATTGATTTATGTGTCTGTTCTTTTGTCAATATCATACTGTCTTTGTTTCTATTACTTTGTAAATTACGAAAGCAGGTTCCCTGATTTCCAAATTTGGCCATTTTTTTTTCCTTCAAAATTGTTTGGCTATTCTAGTTCTTTGCTTTTTCATATAATTTTAAAATTACCTTGCTTATTTCTACAAAAAATTCATACTGCAATGTTTATCAGTATTGCACTGAATCTCTAAACCTGTTTGGGTATAATTGACATCCAGCAATATTGCATATTCCAATCTATGAATATCTTATATCTCTCTGTTGATTCAAGTCTGCTTTGATTTCTTTGTCCCTTTGGTTTCCAGCTTTCATCATACTGATCCTAAACATATTTTGATATATTTATTTGATATCTTTCATGTTATTATAAATGATACTGTTTTTATATTTAAATTTCCACTTCATAATTATGAATATGGAAATATAAGTGATTTTTATATATGAACATAGGTAATCCTGTAGCTTTGCCAAATTCATTTATTCTCATAGCCATTTGGTAGATTCCTTAGAATTTTACATGCAGACAACTGTGTTGTCTGTGAATAGCAATGCTTTTATTTCTTTCCAATCTGTATGACATTTATTTCTTTTTTCTTGCCTTTTTGCCCCTAATAGGACATCCAGTAAAATGTTAAATTGGATTGGTGAGAGAGATCAGACATCCTTGCCTTGTTCTATGTCACTGGGGGAAAGCATTTATTCTTTCATCGTTAAGGTTGTTGCTAGTTGTAGTTTTTCTGTAGATGCCCTTTATCAGGTTGAAGAAAGTTCTTCAATTTCTAATTTGTTGAGTCTTACTATCGTGGATGAATATTAAGCTTTTCACATCCTCTTGCTGCATTTATTCAGATGCTCATATGTTGTCCCTTGTCTCATTCTGTCAATATGGTGAATTACATTGATTTATTTTCTGCTTCCCTTGTTGCTTCTAACCAGCTGCTTTACTATGGGGCTAAATCTGGATTGTGTATGTTTCTTTTTCATCCCAATTTCTACTCTTTTTCCAGTAACTGGAAGATTCCCTGGGGGTGGGGAGAATTCGATTTTTATCTCTAGCCCTCTTTGGGCCATTATTCTCATTTATGAACCAAGCCCTTTTGTGAAAGGAGTTGGCAGTAGGAGAATTGAAGTACATCTGATCTTAGTGTTGATTCTATGATAAATTTTTTCTCCCTACGATATTCCTGAGATTGAGATTCTGATGTTTCTATTTTACAG
Seq C2 exon
ATAAAACTCTGCAAAGACAATGTCTAGCACTTATATCTCCAGTAACTCCTGTCAAGGTTTATTGTTGCTTGTTCATCATTGCAGTCCTGACTACAAGTGTGATTGCACTTTCTATTGTTTTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
-LOC374443:NR_002814:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)